1ml5

Structure of the E. coli ribosomal termination complex with release factor 2

Method: ELECTRON MICROSCOPY

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Peptide chain release factor 2

Escherichia coli

UniProt P07012

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 40 RNA 5 30S 16S RIBOSOMAL RNA × 1 T-RNA(PHE) × 1 A- AND P-SITE MESSENGER RNA CODONS × 1 50S 23S RIBOSOMAL RNA × 1 50S 5S RIBOSOMAL RNA × 1 30S RIBOSOMAL PROTEIN S2 × 1 30S RIBOSOMAL PROTEIN S3 × 1 30S RIBOSOMAL PROTEIN S4 × 1 30S RIBOSOMAL PROTEIN S5 × 1 30S RIBOSOMAL PROTEIN S6 × 1 30S RIBOSOMAL PROTEIN S7 × 1 30S RIBOSOMAL PROTEIN S8 × 1 30S RIBOSOMAL PROTEIN S9 × 1 30S RIBOSOMAL PROTEIN S10 × 1 30S RIBOSOMAL PROTEIN S11 × 1 30S RIBOSOMAL PROTEIN S12 × 1 30S RIBOSOMAL PROTEIN S13 × 1 30S RIBOSOMAL PROTEIN S14 × 1 30S RIBOSOMAL PROTEIN S15 × 1 30S RIBOSOMAL PROTEIN S16 × 1 30S RIBOSOMAL PROTEIN S17 × 1 30S RIBOSOMAL PROTEIN S18 × 1 30S RIBOSOMAL PROTEIN S19 × 1 30S RIBOSOMAL PROTEIN S20 × 1 30S RIBOSOMAL PROTEIN THX × 1 50S RIBOSOMAL PROTEIN L1 × 1 50S RIBOSOMAL PROTEIN L2 × 1 50S RIBOSOMAL PROTEIN L3 × 1 50S RIBOSOMAL PROTEIN L4 × 1 50S RIBOSOMAL PROTEIN L5 × 1 50S RIBOSOMAL PROTEIN L6 × 1 50S RIBOSOMAL PROTEIN L11 × 1 50S RIBOSOMAL PROTEIN L13 × 1 50S RIBOSOMAL PROTEIN L14 × 1 50S RIBOSOMAL PROTEIN L15 × 1 50S RIBOSOMAL PROTEIN L16 × 1 50S RIBOSOMAL PROTEIN L18 × 1 50S RIBOSOMAL PROTEIN L19 × 1 50S RIBOSOMAL PROTEIN L22 × 1 50S RIBOSOMAL PROTEIN L23 × 1 50S RIBOSOMAL PROTEIN L24 × 1 50S RIBOSOMAL PROTEIN L25 × 1 50S RIBOSOMAL PROTEIN L29 × 1 50S RIBOSOMAL PROTEIN L30 × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RF2_ECOLI
Isoform
PDB实体 6
链与序列区间 作者链 Z; PDB构建体 1–365; UniProt 1–365

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1ml5
沉积日期 deposition_date2002-08-30
结构标题 titleStructure of the E. coli ribosomal termination complex with release factor 2
关键词 keywordsE. coli, ribosome, termination of protein synthesis, release factor, cryo-eletron microscopy, angular reconstitution; RIBOSOME
实验方法 methodELECTRON MICROSCOPY

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1ml5__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1ml5__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1ml5__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)85.74 Å
Rg(电子密度)87.19 Å
总 Rg87.96 Å
原子数6303
残基数4599
排除体积752140 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1ml5__assembly_1__model_1 45-meric (45) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (45)

6. 折叠分类 (SCOP + CATH) 22 domains

SCOP 2.08 (22 domains)

结构域编号 domain_idd1ml5c_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5e_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5f_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5g_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5h_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5i_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5j_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5k_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5l_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5m_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5n_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5o_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5p_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5q_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5r_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5s_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5t_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5u_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5v_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5w_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5x_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes
结构域编号 domain_idd1ml5z_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.1 — Ribosome and ribosomal fragments
超家族 Superfamily superfamilyi.1.1 — Ribosome and ribosomal fragments
家族 Family familyi.1.1.1 — Ribosome complexes

7. 引用文献 (1)