SAXSdb — 1mvm

▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN)

OrganismNot specified

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein–DNA	Homooligomer	Protein 60 DNA 180	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 60 ;DNA (5'-D(CPAPAPA)-3') ; × 60 ;DNA (5'-D(PA)-3') ; × 60	Consistent with all polymers
2	Protein–DNA	Monomer	Protein 1 DNA 3	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 1 ;DNA (5'-D(CPAPAPA)-3') ; × 1 ;DNA (5'-D(PA)-3') ; × 1	Consistent with all polymers
3	Protein–DNA	Homooligomer	Protein 5 DNA 15	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 5 ;DNA (5'-D(CPAPAPA)-3') ; × 5 ;DNA (5'-D(PA)-3') ; × 5	Consistent with all polymers
4	Protein–DNA	Homooligomer	Protein 6 DNA 18	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 6 ;DNA (5'-D(CPAPAPA)-3') ; × 6 ;DNA (5'-D(PA)-3') ; × 6	Consistent with all polymers
5	Protein–DNA	Monomer	Protein 1 DNA 3	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 1 ;DNA (5'-D(CPAPAPA)-3') ; × 1 ;DNA (5'-D(PA)-3') ; × 1	Consistent with all polymers
6	Protein–DNA	Homooligomer	Protein 60 DNA 180	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') ; × 60 ;DNA (5'-D(CPAPAPA)-3') ; × 60 ;DNA (5'-D(PA)-3') ; × 60	Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	COAT_MUMIM
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–587； UniProt 132–718

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id	1mvm
Deposition date deposition_date	1996-06-21
Structure title title	MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C
Keywords keywords	COMPLEX (VIRAL COAT PROTEIN-DNA), VIRAL COAT PROTEIN/NUCLEIC ACID, Icosahedral virus, Virus-DNA COMPLEX; Virus/DNA
Experimental Method method	X-RAY DIFFRACTION

▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1mvm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1mvm__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

1mvm__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	109.40 Å
Total Rg	109.30 Å
Atom count	278940
Residues	33900
Excluded volume	4838700 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`1mvm__assembly_1__model_1`	240-MERIC （240）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`1mvm__assembly_2__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3	1	`1mvm__assembly_3__model_1`	eicosameric （20）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4	1	`1mvm__assembly_4__model_1`	24-meric （24）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5	1	`1mvm__assembly_5__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
6	1	`1mvm__assembly_6__model_1`	120-meric （120）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.

▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Description description	PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN)
Molecular weight formula_weight	64745.6 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A
Atom count atom_count	4649

MSDGTSQPDGGNAVHSAARVERAADGPGGSGGGGSGGGGVGVSTGSYDNQTHYRFLGDGWVEITALATRLVHLNMPKSENYCRIRVHNTTDTSVKGNMAKDDAHEQIWTPWSLVDANAWGVWLQPSDWQYICNTMSQLNLVSLDQEIFNVVLKTVTEQDSGGQAIKIYNNDLTACMMVAVDSNNILPYTPAANSMETLGFYPWKPTIASPYRYYFCVDRDLSVTYENQEGTIEHNVMGTPKGMNSQFFTIENTQQITLLRTGDEFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVNWVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQGMDREANGSVRYSYGKQHGENWAAHGPAPERYTWDETNFGSGRDTRDGFIQSAPLVVPPPLNGILTNANPIGTKNDIHFSNVFNSYGPLTTFSHPSPVYPQGQIWDKELDLEHKPRLHITAPFVCKNNAPGQMLVRLGPNLTDQYDPNGATLSRIVTYGTFFWKGKLTMRAKLRANTTWNPVYQVSVEDNGNSYMSVTKWLPTATGNMQSVPLITRPVARNTY

Entity 2 Entity 2 polymer

Description description	;DNA (5'-D(CPCPAPCPCPCPCPAPAPCP*A)-3') ;
Molecular weight formula_weight	3232.1 kDa
Source method src_method	syn
Copy count entity_count	1

Polymer Polymer

Polymer type type	polydeoxyribonucleotide
Chain IDs strand_id	B

CCACCCCAACA

Entity 3 Entity 3 polymer

Description description	;DNA (5'-D(CPAPAPA)-3') ;
Molecular weight formula_weight	1183.8 kDa
Source method src_method	syn
Copy count entity_count	1

Polymer Polymer

Polymer type type	polydeoxyribonucleotide
Chain IDs strand_id	C

CAAA

Entity 4 Entity 4 polymer

Description description	;DNA (5'-D(P*A)-3') ;
Molecular weight formula_weight	331.2 kDa
Source method src_method	syn
Copy count entity_count	1

Polymer Polymer

Polymer type type	polydeoxyribonucleotide
Chain IDs strand_id	D

A

▼

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_id	d1mvma_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.5 — ssDNA viruses
Family Family family	b.121.5.2 — Parvoviridae-like VP

CATH v4.4 (1 domains)

Domain ID domain_id	1mvmA00
Class class	2 — Mainly Beta
Architecture architecture	170 — Beta Complex
Topology topology	30 — Empty Capsid Viral Protein 2
Homologous superfamily homologous superfamily	10 — Parvovirus coat protein VP1/VP2

▶

7. Citations (8)

Structure determination of minute virus of mice.

Acta Crystallogr.,Sect.D (1997)

PMID: 15299974 · DOI: 10.1107/S0907444996010566 PRIMARY

Structure, Sequence, and Function Correlations Among Parvoviruses

Virology (1993)

Structure Determination of Feline Panleukopenia Virus Empty Particles

Proteins (1993)

Determination and Refinement of the Canine Parvovirus Empty-Capsid Structure

Acta Crystallogr.,Sect.D (1993)

;Two Amino Acid Substitutions within the Capsid are Coordinately Required for Acquisition of Fibrotropism by the Lymphotropic Strain of Minute Virus of Mice ;

J.Virol. (1992)

Structure Determination of Monoclinic Canine Parvovirus

Acta Crystallogr.,Sect.B (1992)

The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications

Science (1991)

Functional Implications of the Structure of the Murine Parvovirus, Minute Virus of Mice

To be Published

Unit-cell length a length_a	448.700 Å
Unit-cell length b length_b	416.700 Å
Unit-cell length c length_c	305.300 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	95.80 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	240

Space group space_group	C 1 2 1
Space-group number int_tables_number	5
Crystal system crystal_system	—

Resolution resolution	3.500 Å
Low-resolution limit resolution_low	— Å
R factor r_factor	—
R_work r_work	—
R_free r_free	—

MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN)

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1mvm__assembly_1__model_1

1mvm__assembly_1__model_1 | I(q)

1mvm__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

Entity 4 Entity 4 polymer

Polymer Polymer

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

CATH v4.4 (1 domains)

7. Citations (8)

MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN)

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1mvm__assembly_1__model_1

1mvm__assembly_1__model_1 | I(q)

1mvm__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

Entity 4 Entity 4 polymer

Polymer Polymer

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

CATH v4.4 (1 domains)

7. Citations (8)