1ojh
Crystal structure of NblA from PCC 7120
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1ojh |
| 沉积日期 deposition_date | 2003-07-10 |
| 结构标题 title | Crystal structure of NblA from PCC 7120 |
| 关键词 keywords | DEGRADATION PROTEIN, PHYCOBILISOME DEGRADATION, PROTEIN BINDING; PROTEIN BINDING |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 39.64 Å |
| 回转半径 Rg (电子) rg_electron | 39.96 Å |
| 零角强度 I(0) i0 | 88467400.00 |
| 分子量 molecular_weight | 73762.0 kDa |
| 排除体积 excluded_volume | 91213 ų |
| 包络体积 envelope_volume | 151470 ų |
| 水化壳体积 shell_volume | 33184 ų |
| 包络直径 envelope_diameter | 144.4 Å |
| 壳层 Rg shell_rg | 43.09 Å |
| 包络 Rg envelope_rg | 38.79 Å |
| 形状 Rg shape_rg | 40.07 Å |
| 总 Rg total_rg | 39.82 Å |
| 总原子数 total_atoms | 5116 |
| 残基数 n_residues | 595 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 135.9 Å |
| Rg (实空间) rg_real | 39.78 Å |
| Rg 误差 (实空间) rg_real_error | 1.74 Å |
| I(0) (实空间) i0_real | 8.8470e+07 |
| I(0) 误差 (实空间) i0_real_error | 1.6650e+06 |
| Rg (倒空间) rg_reciprocal | 39.70 Å |
| I(0) (倒空间) i0_reciprocal | 88460000.0000 |
| 解质量估计 total_estimate | 0.8613 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 44.2 Å |
| 偏度 Skewness skewness | 0.234 |
| 峰度 Kurtosis kurtosis | -0.584 |
| 角度范围 angular_range | — – 0.2000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 4251000.0000 |
| 实空间数据点数 n_real_points | 41 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.841; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.831; Smooth: 0.840 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 24 domains
SCOP 2.08 (12 domains)
| 结构域编号 domain_id | d1ojha_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhb_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhc_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhd_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhe_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhf_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhg_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhh_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhi_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhj_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhk_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
| 结构域编号 domain_id | d1ojhl_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.214 — NblA-like |
| 超家族 Superfamily superfamily | a.214.1 — NblA-like |
| 家族 Family family | a.214.1.1 — NblA-like |
CATH v4.4 (12 domains)
| 结构域编号 domain_id | 1ojhA00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhB00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhC00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhD00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhE00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhF00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhG00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhH00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhI00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhJ00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhK00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |
| 结构域编号 domain_id | 1ojhL00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 670 — Phycobilisome degradation protein NblA |