1ord

CRYSTALLOGRAPHIC STRUCTURE OF A PLP-DEPENDENT ORNITHINE DECARBOXYLASE FROM LACTOBACILLUS 30A TO 3.1 ANGSTROMS RESOLUTION

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

ORNITHINE DECARBOXYLASE

物种未注明

UniProt P43099

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 2 PYRIDOXAL-5'-PHOSPHATE × 2 water × 2 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 12 PYRIDOXAL-5'-PHOSPHATE × 12 water × 12 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 DCOR_LACS3
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–730; UniProt 1–730 作者链 B; PDB构建体 1–730; UniProt 1–730

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1ord
沉积日期 deposition_date1995-02-08
结构标题 titleCRYSTALLOGRAPHIC STRUCTURE OF A PLP-DEPENDENT ORNITHINE DECARBOXYLASE FROM LACTOBACILLUS 30A TO 3.1 ANGSTROMS RESOLUTION
关键词 keywordsCARBOXY-LYASE; CARBOXY-LYASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1ord__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1ord__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1ord__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)34.61 Å
Rg(电子密度)33.70 Å
总 Rg34.34 Å
原子数14240
残基数1460
排除体积206990 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1ord__assembly_1__model_1 dimeric (2) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1ord__assembly_2__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (3)

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6. 折叠分类 (SCOP + CATH) 14 domains

SCOP 2.08 (6 domains)

结构域编号 domain_idd1orda1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.1 — CheY-like
家族 Family familyc.23.1.4 — Ornithine decarboxylase N-terminal 'wing' domain
结构域编号 domain_idd1orda2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.67 — PLP-dependent transferase-like
超家族 Superfamily superfamilyc.67.1 — PLP-dependent transferases
家族 Family familyc.67.1.5 — Ornithine decarboxylase major domain
结构域编号 domain_idd1orda3
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.125 — Ornithine decarboxylase C-terminal domain
超家族 Superfamily superfamilyd.125.1 — Ornithine decarboxylase C-terminal domain
家族 Family familyd.125.1.1 — Ornithine decarboxylase C-terminal domain
结构域编号 domain_idd1ordb1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.23 — Flavodoxin-like
超家族 Superfamily superfamilyc.23.1 — CheY-like
家族 Family familyc.23.1.4 — Ornithine decarboxylase N-terminal 'wing' domain
结构域编号 domain_idd1ordb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.67 — PLP-dependent transferase-like
超家族 Superfamily superfamilyc.67.1 — PLP-dependent transferases
家族 Family familyc.67.1.5 — Ornithine decarboxylase major domain
结构域编号 domain_idd1ordb3
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.125 — Ornithine decarboxylase C-terminal domain
超家族 Superfamily superfamilyd.125.1 — Ornithine decarboxylase C-terminal domain
家族 Family familyd.125.1.1 — Ornithine decarboxylase C-terminal domain

CATH v4.4 (8 domains)

结构域编号 domain_id1ordA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily220 —
结构域编号 domain_id1ordA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology640 — Aspartate Aminotransferase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Type I PLP-dependent aspartate aminotransferase-like (Major domain)
结构域编号 domain_id1ordA03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology1150 — Aspartate Aminotransferase, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aspartate Aminotransferase, domain 1
结构域编号 domain_id1ordA04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology100 — Ornithine Decarboxylase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily10 — Orn/Lys/Arg decarboxylase, C-terminal domain
结构域编号 domain_id1ordB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily220 —
结构域编号 domain_id1ordB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology640 — Aspartate Aminotransferase; domain 2
同源超家族 H-superfamily homologous superfamily10 — Type I PLP-dependent aspartate aminotransferase-like (Major domain)
结构域编号 domain_id1ordB03
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology1150 — Aspartate Aminotransferase, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aspartate Aminotransferase, domain 1
结构域编号 domain_id1ordB04
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology100 — Ornithine Decarboxylase; Chain A, domain 4
同源超家族 H-superfamily homologous superfamily10 — Orn/Lys/Arg decarboxylase, C-terminal domain
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7. 引用文献 (2)