1oxq

Structure and Function Analysis of Peptide Antagonists of Melanoma Inhibitor of Apoptosis (ML-IAP)

Method: X-RAY DIFFRACTION Dmax: 97.3 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Baculoviral IAP repeat-containing protein 7

Homo sapiens

UniProt Q96CA5

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白单体 单体 蛋白 × 1 PDB 声明:monomeric(1) 与蛋白拷贝数一致 链 A; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
10 蛋白同源多聚体 同源多聚体 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 A; UniProt 63–179 链 D; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 2 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
11 蛋白单体 单体 蛋白 × 1 PDB 声明:monomeric(1) 与蛋白拷贝数一致 链 E; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
2 蛋白单体 单体 蛋白 × 1 PDB 声明:monomeric(1) 与蛋白拷贝数一致 链 B; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
3 蛋白单体 单体 蛋白 × 1 PDB 声明:monomeric(1) 与蛋白拷贝数一致 链 C; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
4 蛋白单体 单体 蛋白 × 1 PDB 声明:monomeric(1) 与蛋白拷贝数一致 链 D; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 1 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
5 蛋白异源复合物 异源复合物 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 E; UniProt 63–179 片段:BIR domain, residues 63-179 AVPIAQKSE (Smac) peptide × 1 ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
6 蛋白异源复合物 异源复合物 蛋白 × 6 PDB 声明:hexameric(6) 与蛋白拷贝数一致 链 A; UniProt 63–179 链 B; UniProt 63–179 链 C; UniProt 63–179 链 D; UniProt 63–179 链 E; UniProt 63–179 片段:BIR domain, residues 63-179 AVPIAQKSE (Smac) peptide × 1 ZN ZINC ION × 5 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
7 蛋白异源复合物 异源复合物 蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白拷贝数一致 链 A; UniProt 63–179 链 D; UniProt 63–179 链 E; UniProt 63–179 片段:BIR domain, residues 63-179 AVPIAQKSE (Smac) peptide × 1 ZN ZINC ION × 3 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
8 蛋白同源多聚体 同源多聚体 蛋白 × 2 PDB 声明:dimeric(2) 与蛋白拷贝数一致 链 B; UniProt 63–179 链 C; UniProt 63–179 片段:BIR domain, residues 63-179 ZN ZINC ION × 2 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218
9 蛋白异源复合物 异源复合物 蛋白 × 3 PDB 声明:trimeric(3) 与蛋白拷贝数一致 链 D; UniProt 63–179 链 E; UniProt 63–179 片段:BIR domain, residues 63-179 AVPIAQKSE (Smac) peptide × 1 ZN ZINC ION × 2 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, SITTING DROP;pH 5;298 K;sodium acetate, PEG 300, DTT, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 分辨率 2.30 Å R-free 0.218

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 8 个其他 PDB 条目、42 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 BIRC7_HUMAN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 24–140; UniProt 63–179 作者链 B; PDB构建体 24–140; UniProt 63–179 作者链 C; PDB构建体 24–140; UniProt 63–179 作者链 D; PDB构建体 24–140; UniProt 63–179 作者链 E; PDB构建体 24–140; UniProt 63–179

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 1oxq

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1oxq
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1oxq
沉积日期 deposition_date2003-04-03
结构标题 titleStructure and Function Analysis of Peptide Antagonists of Melanoma Inhibitor of Apoptosis (ML-IAP)
关键词 keywordszinc binding, peptide complex, apoptosis inhibition, APOPTOSIS-peptide complex; APOPTOSIS/peptide
实验方法 methodX-RAY DIFFRACTION

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier27.69
回转半径 Rg (电子) rg_electron27.38
零角强度 I(0) i053772700.00
分子量 molecular_weight56775.0 kDa
排除体积 excluded_volume70529 ų
包络体积 envelope_volume87868 ų
水化壳体积 shell_volume28178 ų
包络直径 envelope_diameter100.9
壳层 Rg shell_rg33.07
包络 Rg envelope_rg27.77
形状 Rg shape_rg27.40
总 Rg total_rg27.90
总原子数 total_atoms4006
残基数 n_residues499
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax97.3
Rg (实空间) rg_real27.94
Rg 误差 (实空间) rg_real_error0.87
I(0) (实空间) i0_real5.3770e+07
I(0) 误差 (实空间) i0_real_error8.2050e+05
Rg (倒空间) rg_reciprocal27.86
I(0) (倒空间) i0_reciprocal53770000.0000
解质量估计 total_estimate0.8369
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary30.7
偏度 Skewness skewness0.598
峰度 Kurtosis kurtosis0.045
角度范围 angular_range— – 0.2850 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha9416000.0000
实空间数据点数 n_real_points58
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.732; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.856; Smooth: 0.825

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (5)

7. 折叠分类 (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

结构域编号 domain_idd1oxqa_
类 Class classg — Small proteins
折叠类型 Fold foldg.52 — Inhibitor of apoptosis (IAP) repeat
超家族 Superfamily superfamilyg.52.1 — Inhibitor of apoptosis (IAP) repeat
家族 Family familyg.52.1.1 — Inhibitor of apoptosis (IAP) repeat
结构域编号 domain_idd1oxqb_
类 Class classg — Small proteins
折叠类型 Fold foldg.52 — Inhibitor of apoptosis (IAP) repeat
超家族 Superfamily superfamilyg.52.1 — Inhibitor of apoptosis (IAP) repeat
家族 Family familyg.52.1.1 — Inhibitor of apoptosis (IAP) repeat
结构域编号 domain_idd1oxqc_
类 Class classg — Small proteins
折叠类型 Fold foldg.52 — Inhibitor of apoptosis (IAP) repeat
超家族 Superfamily superfamilyg.52.1 — Inhibitor of apoptosis (IAP) repeat
家族 Family familyg.52.1.1 — Inhibitor of apoptosis (IAP) repeat
结构域编号 domain_idd1oxqd_
类 Class classg — Small proteins
折叠类型 Fold foldg.52 — Inhibitor of apoptosis (IAP) repeat
超家族 Superfamily superfamilyg.52.1 — Inhibitor of apoptosis (IAP) repeat
家族 Family familyg.52.1.1 — Inhibitor of apoptosis (IAP) repeat
结构域编号 domain_idd1oxqe_
类 Class classg — Small proteins
折叠类型 Fold foldg.52 — Inhibitor of apoptosis (IAP) repeat
超家族 Superfamily superfamilyg.52.1 — Inhibitor of apoptosis (IAP) repeat
家族 Family familyg.52.1.1 — Inhibitor of apoptosis (IAP) repeat

CATH v4.4 (5 domains)

结构域编号 domain_id1oxqA00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1170 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
同源超家族 H-superfamily homologous superfamily10 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
结构域编号 domain_id1oxqB00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1170 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
同源超家族 H-superfamily homologous superfamily10 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
结构域编号 domain_id1oxqC00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1170 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
同源超家族 H-superfamily homologous superfamily10 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
结构域编号 domain_id1oxqD00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1170 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
同源超家族 H-superfamily homologous superfamily10 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
结构域编号 domain_id1oxqE00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1170 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
同源超家族 H-superfamily homologous superfamily10 — Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A

8. 引用文献 (3)

9. 文件与曲线 (10)