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1p58

Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major envelope protein E

OrganismNot specified

UniProt P12823

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 360 No other associated polymer Consistent with protein count
2 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
3 Protein homooligomer Homooligomer Protein 30 No other associated polymer Consistent with protein count
4 Protein homooligomer Homooligomer Protein 36 No other associated polymer Consistent with protein count
5 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1l9k 1r6a

2 assemblies

Homodimer
1l9k 1r6a 1r6r

3 assemblies

Homotetramer

None

Other homooligomers
1ok8 1p58 1p58 1p58 1p58 1p58 1thd 1thd 1thd 1thd 1thd

11 assemblies

Heteromeric or nucleic-acid complex
1oan 1oke 3j8d 3j8d 3j8d 3j8d 3j8d 5hhg

8 assemblies

View Construct and Data Evidence
UniProt name POLG_DEN2P
Isoform —
PDB entities 1, 2
Chains and sequence ranges Author chain A； PDBConstruct 1–495； UniProt 281–775 Author chain B； PDBConstruct 1–495； UniProt 281–775 Author chain C； PDBConstruct 1–495； UniProt 281–775 Author chain D； PDBConstruct 1–75； UniProt 206–280 Author chain E； PDBConstruct 1–75； UniProt 206–280 Author chain F； PDBConstruct 1–75； UniProt 206–280

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1p58
Deposition date deposition_date2003-04-25
Structure title titleComplex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction
Keywords keywords;FLAVIVIRUS, FLAVIVIRIDAE, DENGUE VIRUS, GLYCOPROTEIN E FROM TICK-BORNE ENCEPHALITIS VIRUS, MEMBRANE PROTEIN M, CRYO-EM, Icosahedral virus, Virus ;; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1p58__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1p58__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1p58__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)216.30 Å
Total Rg216.30 Å
Atom count0
Residues0
Excluded volume13339000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1p58__assembly_1__model_1 360-MERIC （360） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1p58__assembly_2__model_1 hexameric （6） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 1p58__assembly_3__model_1 30-meric （30） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 1p58__assembly_4__model_1 36-meric （36） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 1p58__assembly_5__model_1 hexameric （6） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (6 domains)

Domain ID domain_idd1p58a_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
Domain ID domain_idd1p58b_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
Domain ID domain_idd1p58c_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
Domain ID domain_idd1p58d_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
Domain ID domain_idd1p58e_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
Domain ID domain_idd1p58f_
Class classi — Low resolution protein structures
Fold Fold foldi.17 — Virus envelope proteins
Superfamily Superfamily superfamilyi.17.1 — Virus envelope proteins
Family Family familyi.17.1.1 — Virus envelope proteins
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7. Citations (5)