SAXSdb — 1p8c

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1. Protein Identity and Related Structures Protein Identity & Related Structures

conserved hypothetical protein

Thermotoga maritima

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 6	water × 6	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	Q9X1V5_THEMA
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 23–143； UniProt 1–121 Author chain B； PDBConstruct 23–143； UniProt 1–121 Author chain C； PDBConstruct 23–143； UniProt 1–121 Author chain D； PDBConstruct 23–143； UniProt 1–121 Author chain E； PDBConstruct 23–143； UniProt 1–121 Author chain F； PDBConstruct 23–143； UniProt 1–121

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1p8c
Deposition date deposition_date	2003-05-06
Structure title title	Crystal structure of TM1620 (APC4843) from Thermotoga maritima
Keywords keywords	;Conserved hypothetical protein, Structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ;; STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1p8c__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1p8c__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

1p8c__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	25.85 Å
Rg (electron density)	24.51 Å
Total Rg	25.40 Å
Atom count	5548
Residues	696
Excluded volume	99301 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`1p8c__assembly_1__model_1`	hexameric （6）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (6 domains)

Domain ID domain_id	d1p8ca_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

Domain ID domain_id	d1p8cb_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

Domain ID domain_id	d1p8cc_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

Domain ID domain_id	d1p8cd_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

Domain ID domain_id	d1p8ce_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

Domain ID domain_id	d1p8cf_
Class class	a — All alpha proteins
Fold Fold fold	a.152 — AhpD-like
Superfamily Superfamily superfamily	a.152.1 — AhpD-like
Family Family family	a.152.1.2 — CMD-like

CATH v4.4 (6 domains)

Domain ID domain_id	1p8cA00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

Domain ID domain_id	1p8cB00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

Domain ID domain_id	1p8cC00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

Domain ID domain_id	1p8cD00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

Domain ID domain_id	1p8cE00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

Domain ID domain_id	1p8cF00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	1290 — AhpD-like
Homologous superfamily homologous superfamily	10 — AhpD-like

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Unit-cell length a length_a	65.819 Å
Unit-cell length b length_b	82.541 Å
Unit-cell length c length_c	135.397 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	24

Space group space_group	P 21 21 21
Space-group number int_tables_number	19
Crystal system crystal_system	—

Resolution resolution	2.300 Å
Low-resolution limit resolution_low	48.100 Å
R factor r_factor	0.2250
R_work r_work	0.2250
R_free r_free	0.2900

Description description	conserved hypothetical protein
Molecular weight formula_weight	16523.9 kDa
Source method src_method	man
Copy count entity_count	6

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F
Atom count atom_count	5635

Crystal structure of TM1620 (APC4843) from Thermotoga maritima

1. Protein Identity and Related Structures Protein Identity & Related Structures

conserved hypothetical protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1p8c__assembly_1__model_1

1p8c__assembly_1__model_1 | I(q)

1p8c__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 water

6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (6 domains)

CATH v4.4 (6 domains)

7. Citations (1)

Source organism organism	Thermotoga maritima
NCBI taxonomy ID ncbi_taxonomy_id	2336
Host organism host_organism	Escherichia coli

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	87

Crystal structure of TM1620 (APC4843) from Thermotoga maritima

1. Protein Identity and Related Structures Protein Identity & Related Structures

conserved hypothetical protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1p8c__assembly_1__model_1

1p8c__assembly_1__model_1 | I(q)

1p8c__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 water

6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (6 domains)

CATH v4.4 (6 domains)

7. Citations (1)