物种未注明
| Assembly | 物理组成 | 蛋白状态 | 分子拷贝数 | 共同组分 | 数据核对 |
|---|---|---|---|---|---|
| 1 | 蛋白异源复合物 | 异源复合物 | 蛋白 2 | DxE cargo sorting signal peptide of yeast Sys1 protein × 1 ZINC ION × 1 water × 2 | 与蛋白数一致 |
| UniProt名称 | SEC24_YEAST |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 A； PDB构建体 1–810； UniProt 117–926 |
页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。
| 条目编号 entry_id | 1pd1 |
| 沉积日期 deposition_date | 2003-05-18 |
| 结构标题 title | Crystal structure of the COPII coat subunit, Sec24, complexed with a peptide containing the DxE cargo sorting signal of yeast Sys1 protein |
| 关键词 keywords | TRANSPORT PROTEIN; TRANSPORT PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 28.34 Å |
| Rg（电子密度） | 27.25 Å |
| 总 Rg | 28.20 Å |
| 原子数 | 5893 |
| 残基数 | 744 |
| 排除体积 | 105650 ų |
| 最大 q | 0.500 Å⁻¹ |
| 结构域编号 domain_id | d1pd1a1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.71 — ERP29 C domain-like |
| 超家族 Superfamily superfamily | a.71.2 — Helical domain of Sec23/24 |
| 家族 Family family | a.71.2.1 — Helical domain of Sec23/24 |
| 结构域编号 domain_id | d1pd1a2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f |
| 超家族 Superfamily superfamily | b.2.8 — beta-sandwich domain of Sec23/24 |
| 家族 Family family | b.2.8.1 — beta-sandwich domain of Sec23/24 |
| 结构域编号 domain_id | d1pd1a3 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.62 — vWA-like |
| 超家族 Superfamily superfamily | c.62.1 — vWA-like |
| 家族 Family family | c.62.1.2 — Trunk domain of Sec23/24 |
| 结构域编号 domain_id | d1pd1a4 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.109 — Gelsolin-like |
| 超家族 Superfamily superfamily | d.109.2 — C-terminal, gelsolin-like domain of Sec23/24 |
| 家族 Family family | d.109.2.1 — C-terminal, gelsolin-like domain of Sec23/24 |
| 结构域编号 domain_id | d1pd1a5 |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.41 — Rubredoxin-like |
| 超家族 Superfamily superfamily | g.41.10 — Zn-finger domain of Sec23/24 |
| 家族 Family family | g.41.10.1 — Zn-finger domain of Sec23/24 |
| 结构域编号 domain_id | 1pd1A01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 120 — Four Helix Bundle (Hemerythrin (Met), subunit A) |
| 同源超家族 H-superfamily homologous superfamily | 730 — Sec23/Sec24 helical domain |
| 结构域编号 domain_id | 1pd1A02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 30 — Roll |
| 拓扑 Topology topology | 30 — SH3 type barrels. |
| 同源超家族 H-superfamily homologous superfamily | 380 — Zn-finger domain of Sec23/24 |
| 结构域编号 domain_id | 1pd1A03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1670 — beta-sandwich domain of Sec23/24 |
| 结构域编号 domain_id | 1pd1A04 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 410 — von Willebrand factor, type A domain |
| 结构域编号 domain_id | 1pd1A05 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 20 — Severin |
| 同源超家族 H-superfamily homologous superfamily | 10 — Severin |