1pdy

X-RAY STRUCTURE AND CATALYTIC MECHANISM OF LOBSTER ENOLASE

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ENOLASE

OrganismNot specified

UniProt P56252

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 SULFATE ION × 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ENO_HOMGA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–434; UniProt 1–433

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1pdy
Deposition date deposition_date1995-06-05
Structure title titleX-RAY STRUCTURE AND CATALYTIC MECHANISM OF LOBSTER ENOLASE
Keywords keywordsLYASE (CARBON-OXYGEN); LYASE (CARBON-OXYGEN)
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1pdy__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1pdy__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1pdy__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)27.71 Å
Rg (electron density)26.76 Å
Total Rg27.62 Å
Atom count6612
Residues866
Excluded volume117740 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1pdy__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1pdya1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.1 — TIM beta/alpha-barrel
Superfamily Superfamily superfamilyc.1.11 — Enolase C-terminal domain-like
Family Family familyc.1.11.1 — Enolase
Domain ID domain_idd1pdya2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.54 — Enolase N-terminal domain-like
Superfamily Superfamily superfamilyd.54.1 — Enolase N-terminal domain-like
Family Family familyd.54.1.1 — Enolase N-terminal domain-like

CATH v4.4 (2 domains)

Domain ID domain_id1pdyA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology390 — Enolase-like; domain 1
Homologous superfamily homologous superfamily10 — Enolase-like, N-terminal domain
Domain ID domain_id1pdyA02
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology20 — TIM Barrel
Homologous superfamily homologous superfamily120 — Enolase-like C-terminal domain
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7. Citations (3)