1prt

THE CRYSTAL STRUCTURE OF PERTUSSIS TOXIN

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PERTUSSIS TOXIN (SUBUNIT S1)

Bordetella pertussis

UniProt P04977

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TOX1_BORPE
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–234; UniProt 36–269 作者链 G; PDB构建体 1–234; UniProt 36–269

PERTUSSIS TOXIN (SUBUNIT S2)

Bordetella pertussis

UniProt P04978

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TOX2_BORPE
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–196; UniProt 31–226 作者链 H; PDB构建体 1–196; UniProt 31–226

PERTUSSIS TOXIN (SUBUNIT S3)

Bordetella pertussis

UniProt P04979

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TOX3_BORPE
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–196; UniProt 32–227 作者链 I; PDB构建体 1–196; UniProt 32–227

PERTUSSIS TOXIN (SUBUNIT S4)

Bordetella pertussis

UniProt P0A3R5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S5) × 1 (P04981) 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TOX4_BORPE
Isoform —
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–110; UniProt 43–152 作者链 E; PDB构建体 1–110; UniProt 43–152 作者链 J; PDB构建体 1–110; UniProt 43–152 作者链 K; PDB构建体 1–110; UniProt 43–152

PERTUSSIS TOXIN (SUBUNIT S5)

Bordetella pertussis

UniProt P04981

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) 与蛋白数一致
2 蛋白异源复合物 异源复合物 蛋白 6 PERTUSSIS TOXIN (SUBUNIT S1) × 1 (P04977) PERTUSSIS TOXIN (SUBUNIT S2) × 1 (P04978) PERTUSSIS TOXIN (SUBUNIT S3) × 1 (P04979) PERTUSSIS TOXIN (SUBUNIT S4) × 2 (P0A3R5) 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TOX5_BORPE
Isoform —
PDB实体 5
链与序列区间 作者链 F; PDB构建体 1–98; UniProt 36–133 作者链 L; PDB构建体 1–98; UniProt 36–133

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1prt
沉积日期 deposition_date1993-11-22
结构标题 titleTHE CRYSTAL STRUCTURE OF PERTUSSIS TOXIN
关键词 keywordsTOXIN; TOXIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1prt__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1prt__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1prt__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)30.59 Å
Rg(电子密度)29.81 Å
总 Rg30.20 Å
原子数7252
残基数934
排除体积128930 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1prt__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1prt__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (5)

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6. 折叠分类 (SCOP + CATH) 32 domains

SCOP 2.08 (16 domains)

结构域编号 domain_idd1prta_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.166 — ADP-ribosylation
超家族 Superfamily superfamilyd.166.1 — ADP-ribosylation
家族 Family familyd.166.1.1 — ADP-ribosylating toxins
结构域编号 domain_idd1prtb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtb2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.2 — Aerolysin/Pertussis toxin (APT) domain
结构域编号 domain_idd1prtc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtc2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.2 — Aerolysin/Pertussis toxin (APT) domain
结构域编号 domain_idd1prtd_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prte_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtf_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtg_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.166 — ADP-ribosylation
超家族 Superfamily superfamilyd.166.1 — ADP-ribosylation
家族 Family familyd.166.1.1 — ADP-ribosylating toxins
结构域编号 domain_idd1prth1
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prth2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.2 — Aerolysin/Pertussis toxin (APT) domain
结构域编号 domain_idd1prti1
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prti2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.2 — Aerolysin/Pertussis toxin (APT) domain
结构域编号 domain_idd1prtj_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtk_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits
结构域编号 domain_idd1prtl_
类 Class classb — All beta proteins
折叠类型 Fold foldb.40 — OB-fold
超家族 Superfamily superfamilyb.40.2 — Bacterial enterotoxins
家族 Family familyb.40.2.1 — Bacterial AB5 toxins, B-subunits

CATH v4.4 (16 domains)

结构域编号 domain_id1prtA00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology210 — Heat-Labile Enterotoxin; Chain A
同源超家族 H-superfamily homologous superfamily10 — Heat-Labile Enterotoxin, subunit A
结构域编号 domain_id1prtB01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology40 — Pertussis Toxin; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aerolysin/Pertussis toxin (APT), N-terminal domain
结构域编号 domain_id1prtB02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtC01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology40 — Pertussis Toxin; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aerolysin/Pertussis toxin (APT), N-terminal domain
结构域编号 domain_id1prtC02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtD00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtE00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtF00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtG00
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology210 — Heat-Labile Enterotoxin; Chain A
同源超家族 H-superfamily homologous superfamily10 — Heat-Labile Enterotoxin, subunit A
结构域编号 domain_id1prtH01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology40 — Pertussis Toxin; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aerolysin/Pertussis toxin (APT), N-terminal domain
结构域编号 domain_id1prtH02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtI01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology40 — Pertussis Toxin; Chain B, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aerolysin/Pertussis toxin (APT), N-terminal domain
结构域编号 domain_id1prtI02
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtJ00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtK00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
结构域编号 domain_id1prtL00
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
同源超家族 H-superfamily homologous superfamily110 —
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7. 引用文献 (1)