1q3e

HCN2J 443-645 in the presence of cGMP

Method: X-RAY DIFFRACTION Dmax: 101.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2

Mus musculus

UniProt O88703

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 443–645 Fragment:Residues 443-645 (Reference sequence numbering) PCG CYCLIC GUANOSINE MONOPHOSPHATE × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 4.6;277 K;PEG 400, sodium citrate, sodium chloride, DTT, HEPES, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K Resolution 1.90 Å R-free 0.239
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 443–645 Fragment:Residues 443-645 (Reference sequence numbering) PCG CYCLIC GUANOSINE MONOPHOSPHATE × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 4.6;277 K;PEG 400, sodium citrate, sodium chloride, DTT, HEPES, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K Resolution 1.90 Å R-free 0.239
3 Protein homooligomer Homooligomer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain A; UniProt 443–645 Chain B; UniProt 443–645 Fragment:Residues 443-645 (Reference sequence numbering) PCG CYCLIC GUANOSINE MONOPHOSPHATE × 8 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 4.6;277 K;PEG 400, sodium citrate, sodium chloride, DTT, HEPES, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K Resolution 1.90 Å R-free 0.239

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

14 other PDB entries and 22 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HCN2_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–207; UniProt 443–645 Author chain B; PDBConstruct 5–207; UniProt 443–645

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1q3e

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1q3e
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1q3e
Deposition date deposition_date2003-07-29
Structure title titleHCN2J 443-645 in the presence of cGMP
Keywords keywordsCNBD, C-LINKER, PACEMAKER, HCN, CHANNEL, CYCLIC NUCLEOTIDE, CAP, PKA, cGMP, ION CHANNEL, LIGAND, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.23
Radius of gyration Rg (electron density) rg_electron28.99
Forward intensity I(0) i032744500.00
Molecular weight molecular_weight43463.0 kDa
Excluded volume excluded_volume53945 ų
Envelope volume envelope_volume73723 ų
Hydration-shell volume shell_volume23238 ų
Envelope diameter envelope_diameter102.9
Shell Rg shell_rg32.76
Envelope Rg envelope_rg29.50
Shape Rg shape_rg29.07
Total Rg total_rg29.15
Total atoms total_atoms3057
Residues n_residues381
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax101.6
Rg (real space) rg_real29.59
Rg uncertainty (real space) rg_real_error0.84
I(0) (real space) i0_real3.2740e+07
I(0) uncertainty (real space) i0_real_error5.0040e+05
Rg (reciprocal space) rg_reciprocal29.44
I(0) (reciprocal space) i0_reciprocal32740000.0000
Solution quality estimate total_estimate0.7863
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.2
Skewness Skewness skewness0.626
Kurtosis Kurtosis kurtosis-0.199
Angular range angular_range— – 0.2700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2914000.0000
Real-space data points n_real_points55
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.680; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.704; Smooth: 0.472

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1q3ea_
Class classb — All beta proteins
Fold Fold foldb.82 — Double-stranded beta-helix
Superfamily Superfamily superfamilyb.82.3 — cAMP-binding domain-like
Family Family familyb.82.3.2 — cAMP-binding domain
Domain ID domain_idd1q3eb_
Class classb — All beta proteins
Fold Fold foldb.82 — Double-stranded beta-helix
Superfamily Superfamily superfamilyb.82.3 — cAMP-binding domain-like
Family Family familyb.82.3.2 — cAMP-binding domain

CATH v4.4 (4 domains)

Domain ID domain_id1q3eA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily630 — Helix hairpin bin
Domain ID domain_id1q3eA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily10 — Jelly Rolls
Domain ID domain_id1q3eB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily630 — Helix hairpin bin
Domain ID domain_id1q3eB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily10 — Jelly Rolls

8. Citations (1)

9. Files and Curves (10)