1qwt

Auto-inhibitory interferon regulation factor-3 (IRF3) transactivation domain

Method: X-RAY DIFFRACTION Dmax: 86.8 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Interferon regulatory factor 3

Homo sapiens

UniProt Q14653

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 173–427 Chain B; UniProt 173–427 Not recorded PO4 PHOSPHATE ION × 8 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.10 Å R-free 0.214

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 29 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IRF3_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–255; UniProt 173–427 Author chain B; PDBConstruct 1–255; UniProt 173–427

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1qwt

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1qwt
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1qwt
Deposition date deposition_date2003-09-03
Structure title titleAuto-inhibitory interferon regulation factor-3 (IRF3) transactivation domain
Keywords keywordsDNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.58
Radius of gyration Rg (electron density) rg_electron26.31
Forward intensity I(0) i050614400.00
Molecular weight molecular_weight53766.0 kDa
Excluded volume excluded_volume66529 ų
Envelope volume envelope_volume84758 ų
Hydration-shell volume shell_volume27065 ų
Envelope diameter envelope_diameter89.7
Shell Rg shell_rg33.48
Envelope Rg envelope_rg26.10
Shape Rg shape_rg26.29
Total Rg total_rg27.13
Total atoms total_atoms3778
Residues n_residues478
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax86.8
Rg (real space) rg_real27.57
Rg uncertainty (real space) rg_real_error0.42
I(0) (real space) i0_real5.0610e+07
I(0) uncertainty (real space) i0_real_error7.1400e+05
Rg (reciprocal space) rg_reciprocal27.57
I(0) (reciprocal space) i0_reciprocal50610000.0000
Solution quality estimate total_estimate0.9065
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary28.4
Skewness Skewness skewness0.289
Kurtosis Kurtosis kurtosis-0.521
Angular range angular_range— – 0.2900 −1
Current regularization parameter α current_alpha0.0001
Highest regularization parameter α highest_alpha11000000.0000
Real-space data points n_real_points59
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.953

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1qwta_
Class classb — All beta proteins
Fold Fold foldb.26 — SMAD/FHA domain
Superfamily Superfamily superfamilyb.26.1 — SMAD/FHA domain
Family Family familyb.26.1.3 — Interferon regulatory factor 3 (IRF3), transactivation domain
Domain ID domain_idd1qwtb_
Class classb — All beta proteins
Fold Fold foldb.26 — SMAD/FHA domain
Superfamily Superfamily superfamilyb.26.1 — SMAD/FHA domain
Family Family familyb.26.1.3 — Interferon regulatory factor 3 (IRF3), transactivation domain

CATH v4.4 (2 domains)

Domain ID domain_id1qwtA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology200 — Tumour Suppressor Smad4
Homologous superfamily homologous superfamily10
Domain ID domain_id1qwtB00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology200 — Tumour Suppressor Smad4
Homologous superfamily homologous superfamily10

8. Citations (1)

9. Files and Curves (10)