1reu

Structure of the bone morphogenetic protein 2 mutant L51P

Method: X-RAY DIFFRACTION Dmax: 63.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

bone morphogenetic protein 2

Homo sapiens

UniProt P12643

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 294–396 Fragment:mature part Mutation:L51P MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;lithium sulfate, tert-butanol, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 2.65 Å R-free 0.235
2 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 294–396 Fragment:mature part Mutation:L51P MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 12 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;lithium sulfate, tert-butanol, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 2.65 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BMP2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–103; UniProt 294–396

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1reu

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1reu
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1reu
Deposition date deposition_date2003-11-07
Structure title titleStructure of the bone morphogenetic protein 2 mutant L51P
Keywords keywordsTGF-beta fold, HORMONE-GROWTH FACTOR COMPLEX; HORMONE/GROWTH FACTOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.40
Radius of gyration Rg (electron density) rg_electron18.39
Forward intensity I(0) i02713200.00
Molecular weight molecular_weight11718.0 kDa
Excluded volume excluded_volume14601 ų
Envelope volume envelope_volume18587 ų
Hydration-shell volume shell_volume9435 ų
Envelope diameter envelope_diameter62.6
Shell Rg shell_rg22.31
Envelope Rg envelope_rg18.53
Shape Rg shape_rg18.41
Total Rg total_rg19.04
Total atoms total_atoms820
Residues n_residues103
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax63.4
Rg (real space) rg_real18.60
Rg uncertainty (real space) rg_real_error0.48
I(0) (real space) i0_real2.7130e+06
I(0) uncertainty (real space) i0_real_error3.5300e+04
Rg (reciprocal space) rg_reciprocal18.57
I(0) (reciprocal space) i0_reciprocal2713000.0000
Solution quality estimate total_estimate0.8236
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary15.6
Skewness Skewness skewness0.461
Kurtosis Kurtosis kurtosis-0.561
Angular range angular_range— – 0.4300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha237900.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.744; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.487; Smooth: 0.984

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1reua_
Class classg — Small proteins
Fold Fold foldg.17 — Cystine-knot cytokines
Superfamily Superfamily superfamilyg.17.1 — Cystine-knot cytokines
Family Family familyg.17.1.2 — Transforming growth factor (TGF)-beta

CATH v4.4 (1 domains)

Domain ID domain_id1reuA00
Class class2 — Mainly Beta
Architecture architecture10 — Ribbon
Topology topology90 — Cystine Knot Cytokines, subunit B
Homologous superfamily homologous superfamily10 — Cystine-knot cytokines

8. Citations (3)

9. Files and Curves (10)