Escherichia coli
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | SULFATE ION × 5 water × 1 | Consistent with protein count |
| UniProt name | YDDE_ECOLI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 12–308； UniProt 1–297 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1sdj |
| Deposition date deposition_date | 2004-02-13 |
| Structure title title | X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25. |
| Keywords keywords | STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; STRUCTURAL GENOMICS, UNKNOWN FUNCTION |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 20.87 Å |
| Rg (electron density) | 19.97 Å |
| Total Rg | 20.75 Å |
| Atom count | 2404 |
| Residues | 304 |
| Excluded volume | 42448 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1sdja1 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.21 — Diaminopimelate epimerase-like |
| Superfamily Superfamily superfamily | d.21.1 — Diaminopimelate epimerase-like |
| Family Family family | d.21.1.2 — PhzC/PhzF-like |
| Domain ID domain_id | d1sdja2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.21 — Diaminopimelate epimerase-like |
| Superfamily Superfamily superfamily | d.21.1 — Diaminopimelate epimerase-like |
| Family Family family | d.21.1.2 — PhzC/PhzF-like |
| Domain ID domain_id | d1sdja3 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | d1sdja4 |
| Class class | l — Artifacts |
| Fold Fold fold | l.1 — Tags |
| Superfamily Superfamily superfamily | l.1.1 — Tags |
| Family Family family | l.1.1.1 — Tags |
| Domain ID domain_id | 1sdjA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 10 — Roll |
| Topology topology | 310 — Diaminopimelate Epimerase; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Diaminopimelate Epimerase; Chain A, domain 1 |
| Domain ID domain_id | 1sdjA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 10 — Roll |
| Topology topology | 310 — Diaminopimelate Epimerase; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — Diaminopimelate Epimerase; Chain A, domain 1 |