SAXSdb — 1tmf

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1. Protein Identity and Related Structures Protein Identity & Related Structures

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ;

;Theiler's encephalomyelitis virus ;

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 240	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 60 （P13899）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 4	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 1 （P13899）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 20	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 5 （P13899）	Consistent with protein count
4	Protein heterocomplex	Heteromer	Protein 24	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 6 （P13899）	Consistent with protein count
5	Protein heterocomplex	Heteromer	Protein 4	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 1 （P13899）	Consistent with protein count
6	Protein heterocomplex	Heteromer	Protein 120	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ; × 30 （P13899）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	POLG_TMEVB
Isoform	—
PDB entities	1, 2, 3
Chains and sequence ranges	Author chain 1； PDBConstruct 1–276； UniProt 647–922 Author chain 2； PDBConstruct 1–267； UniProt 148–414 Author chain 3； PDBConstruct 1–232； UniProt 415–646

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ;

;Theiler's encephalomyelitis virus ;

UniProt P13899

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 240	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 60 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 60 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 60 （P08544）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 4	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 1 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 1 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 1 （P08544）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 20	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 5 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 5 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 5 （P08544）	Consistent with protein count
4	Protein heterocomplex	Heteromer	Protein 24	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 6 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 6 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 6 （P08544）	Consistent with protein count
5	Protein heterocomplex	Heteromer	Protein 4	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 1 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 1 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 1 （P08544）	Consistent with protein count
6	Protein heterocomplex	Heteromer	Protein 120	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ; × 30 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ; × 30 （P08544） ;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ; × 30 （P08544）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	POLG_TMEVD
Isoform	—
PDB entities	4
Chains and sequence ranges	Author chain 4； PDBConstruct 1–45； UniProt 90–113

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1tmf
Deposition date deposition_date	1992-02-20
Structure title title	THREE-DIMENSIONAL STRUCTURE OF THEILER MURINE ENCEPHALOMYELITIS VIRUS (BEAN STRAIN)
Keywords keywords	COAT PROTEIN, Icosahedral virus, Virus; VIRUS
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1tmf__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1tmf__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

1tmf__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	135.00 Å
Total Rg	135.10 Å
Atom count	375600
Residues	48360
Excluded volume	6635700 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`1tmf__assembly_1__model_1`	complete icosahedral assembly （240）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`1tmf__assembly_2__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3	1	`1tmf__assembly_3__model_1`	eicosameric （20）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4	1	`1tmf__assembly_4__model_1`	24-meric （24）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5	1	`1tmf__assembly_5__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
6	1	`1tmf__assembly_6__model_1`	120-meric （120）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Description description	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ;
Molecular weight formula_weight	30574.5 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	1
Atom count atom_count	6260

GVDNAEKGKVSNDDASVDFVAEPVKLPENQTRVAFFYDRAVPIGMLRPGQNMETTFNYQENDYRLNCLLLTPLPSFCPDSSSGPQKTKAPVQWRWVRSGGVNGANFPLMTKQDYAFLCFSPFTFYKCDLEVTVSALGTDTVASVLRWAPTGAPADVTDQLIGYTPSLGETRNPHMWLVGAGNSQVSFVVPYNSPLSVLPAAWFNGWSDFGNTKDFGVAPNADFGRLWIQGNTSASVRIRYKKMKVFCPRPTLFFPWPTPTTTKINADNPVPILELE

Source Source

Source organism organism	;Theiler's encephalomyelitis virus ;
NCBI taxonomy ID ncbi_taxonomy_id	12124

Entity 2 Entity 2 polymer

Description description	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) ;
Molecular weight formula_weight	29494.6 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	2

DQNTEEMENLSDRVASDKAGNSATNTQSTVGRLCGYGKSHHGEHPASCADTATDKVLAAERYYTIDLASWTTSQEAFSHIRIPLPHVLAGEDGGVFGATLRRHYLCKTGWRVQVQCNASQFHAGSLLVFMAPEFYTGKGTKTGTMEPSDPFTMDTEWRSPQGAPTGYRYDSRTGFFATNHQNQWQWTVYPHQILNLRTNTTVDLEVPYVNVAPSSSWTQHANWTLVVAVLSPLQYATGSSPDVQITASLQPVNPVFNGLRHETVIAQ

Source Source

Source organism organism	;Theiler's encephalomyelitis virus ;
NCBI taxonomy ID ncbi_taxonomy_id	12124

Entity 3 Entity 3 polymer

Description description	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) ;
Molecular weight formula_weight	25508.9 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	3

SPIPVTVREHKGCFYSTNPDTTVPIYGKTISTPSDYMCGEFSDLLELCKLPTFLGNPNTNNKRYPYFSATNSVPATSMVDYQVALSCSCMANSMLAAVARNFNQYRGSLNFLFVFTGAAMVKGKFLIAYTPPGAGKPTTRDQAMQSTYAIWDLGLNSSFNFTAPFISPTHYRQTSYTSPTITSVDGWVTVWQLTPLTYPSGTPTNSDILTLVSAGDDFTLRMPISPTKWVPQ

Source Source

Source organism organism	;Theiler's encephalomyelitis virus ;
NCBI taxonomy ID ncbi_taxonomy_id	12124

Entity 4 Entity 4 polymer

Description description	;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ;
Molecular weight formula_weight	4686.8 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	4

NESGNEGVIINNFYSNQYQNSIDLSASGGNAGDAPQTNGQLSNLL

Source Source

Source organism organism	;Theiler's encephalomyelitis virus ;
NCBI taxonomy ID ncbi_taxonomy_id	12124

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6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

Domain ID domain_id	d1tmf.1
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1tmf1_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1tmf3_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

CATH v4.4 (3 domains)

Domain ID domain_id	1tmf100
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1tmf200
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1tmf300
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

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Unit-cell length a length_a	331.860 Å
Unit-cell length b length_b	331.860 Å
Unit-cell length c length_c	796.260 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	240

Space group space_group	P 43 2 2
Space-group number int_tables_number	95
Crystal system crystal_system	—

Resolution resolution	3.500 Å
Low-resolution limit resolution_low	— Å
R factor r_factor	—
R_work r_work	—
R_free r_free	—

THREE-DIMENSIONAL STRUCTURE OF THEILER MURINE ENCEPHALOMYELITIS VIRUS (BEAN STRAIN)

1. Protein Identity and Related Structures Protein Identity & Related Structures

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ;

State in the Current Structure

Other States of the Same Protein in the Database

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ;

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1tmf__assembly_1__model_1

1tmf__assembly_1__model_1 | I(q)

1tmf__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

CATH v4.4 (3 domains)

7. Citations (1)

THREE-DIMENSIONAL STRUCTURE OF THEILER MURINE ENCEPHALOMYELITIS VIRUS (BEAN STRAIN)

1. Protein Identity and Related Structures Protein Identity & Related Structures

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) ;

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

;THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) ;

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1tmf__assembly_1__model_1

1tmf__assembly_1__model_1 | I(q)

1tmf__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (4)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

CATH v4.4 (3 domains)

7. Citations (1)