1tr0
Crystal Structure of a boiling stable protein SP1
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1tr0 |
| 沉积日期 deposition_date | 2004-06-18 |
| 结构标题 title | Crystal Structure of a boiling stable protein SP1 |
| 关键词 keywords | PLANT PROTEIN; PLANT PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 59.63 Å |
| 回转半径 Rg (电子) rg_electron | 60.21 Å |
| 零角强度 I(0) i0 | 1182380000.00 |
| 分子量 molecular_weight | 295100.0 kDa |
| 排除体积 excluded_volume | 371470 ų |
| 包络体积 envelope_volume | 509320 ų |
| 水化壳体积 shell_volume | 74679 ų |
| 包络直径 envelope_diameter | 200.4 Å |
| 壳层 Rg shell_rg | 54.83 Å |
| 包络 Rg envelope_rg | 59.04 Å |
| 形状 Rg shape_rg | 60.22 Å |
| 总 Rg total_rg | 60.07 Å |
| 总原子数 total_atoms | 20856 |
| 残基数 n_residues | 2544 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 187.8 Å |
| Rg (实空间) rg_real | 60.26 Å |
| Rg 误差 (实空间) rg_real_error | 1.62 Å |
| I(0) (实空间) i0_real | 1.1820e+09 |
| I(0) 误差 (实空间) i0_real_error | 2.5340e+07 |
| Rg (倒空间) rg_reciprocal | 59.05 Å |
| I(0) (倒空间) i0_reciprocal | 1180000000.0000 |
| 解质量估计 total_estimate | 0.7997 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 57.8 Å |
| 偏度 Skewness skewness | 0.486 |
| 峰度 Kurtosis kurtosis | -0.583 |
| 角度范围 angular_range | — – 0.1300 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 33130000.0000 |
| 实空间数据点数 n_real_points | 27 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.816; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.943; Smooth: 0.001 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 48 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d1tr0a_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0b_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0c_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0d_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0e_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0f_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0g_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0h_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0i_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0j_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0k_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0l_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0m_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0n_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0o_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0p_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0r_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0s_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0t_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0u_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0v_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0w_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0x_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
| 结构域编号 domain_id | d1tr0y_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.4 — Dimeric alpha+beta barrel |
| 家族 Family family | d.58.4.4 — Plant stress-induced protein |
CATH v4.4 (24 domains)
| 结构域编号 domain_id | 1tr0A00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0B00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0C00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0D00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0E00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0F00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0G00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0H00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0I00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0J00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0K00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0L00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0M00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0N00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0O00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0P00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0R00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0S00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0T00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0U00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0V00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0W00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0X00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1tr0Y00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |