1uti

Mona/Gads SH3C in complex with HPK derived peptide

Method: X-RAY DIFFRACTION Dmax: 40.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

GRB2-RELATED ADAPTOR PROTEIN 2

MUS MUSCULUS

UniProt O89100

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 265–322 Fragment:SH3C DOMAIN, RESIDUES 265-322 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1 × 1 (P70218) X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;2M AMMONIUM SULFATE, 0.05M HEPES PH7.5, pH 7.50 Resolution 1.50 Å R-free 0.221

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

7 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRP2_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–58; UniProt 265–322

MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1

OrganismNot specified

UniProt P70218

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 465–480 Fragment:SH3 BINDING PEPTIDE, RESIDUES 465-480 GRB2-RELATED ADAPTOR PROTEIN 2 × 1 (O89100) X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;2M AMMONIUM SULFATE, 0.05M HEPES PH7.5, pH 7.50 Resolution 1.50 Å R-free 0.221

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name M4K1_MOUSE
Isoform
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–16; UniProt 465–480

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1uti

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1uti
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1uti
Deposition date deposition_date2003-12-09
Structure title titleMona/Gads SH3C in complex with HPK derived peptide
Keywords keywords;SIGNALING PROTEIN REGULATOR, SH3 DOMAIN-COMPLEX, ADAPTOR PROTEIN (MONA), PROTEIN SERINE/THREONINE KINASE (HPK1), ANTIGEN RECEPTOR SIGNALLING MEDIATOR (BOTH), SH3 DOMAIN, PPII HELIX ;; SIGNALING PROTEIN REGULATOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier12.95
Radius of gyration Rg (electron density) rg_electron11.48
Forward intensity I(0) i01527830.00
Molecular weight molecular_weight8356.0 kDa
Excluded volume excluded_volume10501 ų
Envelope volume envelope_volume11595 ų
Hydration-shell volume shell_volume8753 ų
Envelope diameter envelope_diameter38.8
Shell Rg shell_rg16.96
Envelope Rg envelope_rg11.98
Shape Rg shape_rg11.39
Total Rg total_rg13.14
Total atoms total_atoms590
Residues n_residues73
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax40.2
Rg (real space) rg_real12.87
Rg uncertainty (real space) rg_real_error0.19
I(0) (real space) i0_real1.5280e+06
I(0) uncertainty (real space) i0_real_error1.6300e+04
Rg (reciprocal space) rg_reciprocal12.88
I(0) (reciprocal space) i0_reciprocal1528000.0000
Solution quality estimate total_estimate0.8996
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary16.3
Skewness Skewness skewness0.141
Kurtosis Kurtosis kurtosis-0.334
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha316700.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.984

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1utia_
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.1 — SH3-domain

CATH v4.4 (1 domains)

Domain ID domain_id1utiA00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains

8. Citations (1)

9. Files and Curves (10)