1v9h

Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Ribonuclease MC

Momordica charantia

UniProt P23540

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 SULFATE ION × 3 URIDINE-5'-MONOPHOSPHATE × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RNMC_MOMCH
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 8–197; UniProt 1–191

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1v9h
Deposition date deposition_date2004-01-26
Structure title titleCrystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
Keywords keywordsHydolase, Nucleic acid, RNA, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1v9h__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1v9h__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1v9h__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)17.31 Å
Rg (electron density)16.25 Å
Total Rg17.27 Å
Atom count1553
Residues193
Excluded volume27244 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1v9h__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1v9ha1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.124 — Ribonuclease Rh-like
Superfamily Superfamily superfamilyd.124.1 — Ribonuclease Rh-like
Family Family familyd.124.1.1 — Ribonuclease Rh-like
Domain ID domain_idd1v9ha2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (1 domains)

Domain ID domain_id1v9hA00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology730 — Ribonuclease Rh; Chain A
Homologous superfamily homologous superfamily10 — Ribonuclease T2-like
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7. Citations (1)