1vaj

Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Hypothetical protein PH0010

Pyrococcus horikoshii

UniProt O57770

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Y010_PYRHO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–206; UniProt 1–206

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1vaj
Deposition date deposition_date2004-02-17
Structure title titleCrystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii
Keywords keywordsalpha + beta fold, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1vaj__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1vaj__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1vaj__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)18.58 Å
Rg (electron density)17.52 Å
Total Rg18.47 Å
Atom count1646
Residues201
Excluded volume29760 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1vaj__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1vaja1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.309 — AMMECR1-like
Superfamily Superfamily superfamilyd.309.1 — AMMECR1-like
Family Family familyd.309.1.1 — AMMECR1-like

CATH v4.4 (2 domains)

Domain ID domain_id1vajA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology700 — Glycoprotein, Type 4 Pilin
Homologous superfamily homologous superfamily20 — Hypothetical protein ph0010; domain 1
Domain ID domain_id1vajA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1490 — Dna Ligase; domain 1
Homologous superfamily homologous superfamily150 — Hypothetical protein ph0010; domain 2
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7. Citations (1)