1w36

RecBCD:DNA complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

EXODEOXYRIBONUCLEASE V BETA CHAIN

ESCHERICHIA COLI

UniProt P08394

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V GAMMA CHAIN × 1 (P07648) EXODEOXYRIBONUCLEASE V ALPHA CHAIN × 1 (P04993) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers
2 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V GAMMA CHAIN × 1 (P07648) EXODEOXYRIBONUCLEASE V ALPHA CHAIN × 1 (P04993) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EX5B_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 1–1180; UniProt 1–1180 Author chain E; PDBConstruct 1–1180; UniProt 1–1180

EXODEOXYRIBONUCLEASE V GAMMA CHAIN

ESCHERICHIA COLI

UniProt P07648

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V BETA CHAIN × 1 (P08394) EXODEOXYRIBONUCLEASE V ALPHA CHAIN × 1 (P04993) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers
2 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V BETA CHAIN × 1 (P08394) EXODEOXYRIBONUCLEASE V ALPHA CHAIN × 1 (P04993) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EX5C_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–1122; UniProt 1–1122 Author chain F; PDBConstruct 1–1122; UniProt 1–1122

EXODEOXYRIBONUCLEASE V ALPHA CHAIN

ESCHERICHIA COLI

UniProt P04993

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V BETA CHAIN × 1 (P08394) EXODEOXYRIBONUCLEASE V GAMMA CHAIN × 1 (P07648) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers
2 Protein–DNA Heteromer Protein 3 DNA 1 EXODEOXYRIBONUCLEASE V BETA CHAIN × 1 (P08394) EXODEOXYRIBONUCLEASE V GAMMA CHAIN × 1 (P07648) DNA HAIRPIN × 1 CALCIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EX5A_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–608; UniProt 1–608 Author chain G; PDBConstruct 1–608; UniProt 1–608

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1w36
Deposition date deposition_date2004-07-13
Structure title titleRecBCD:DNA complex
Keywords keywordsRECOMBINATION, HELICASE, NUCLEASE, HYDROLASE, DNA REPAIR; RECOMBINATION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1w36__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1w36__assembly_2__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1w36__assembly_2__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)47.17 Å
Rg (electron density)46.40 Å
Total Rg46.68 Å
Atom count22890
Residues2813
Excluded volume403430 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1w36__assembly_1__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1w36__assembly_2__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 42 domains

SCOP 2.08 (16 domains)

Domain ID domain_idd1w36b1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36b2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36b3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.52 — Restriction endonuclease-like
Superfamily Superfamily superfamilyc.52.1 — Restriction endonuclease-like
Family Family familyc.52.1.24 — Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
Domain ID domain_idd1w36c1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36c2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36c3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.52 — Restriction endonuclease-like
Superfamily Superfamily superfamilyc.52.1 — Restriction endonuclease-like
Family Family familyc.52.1.25 — Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
Domain ID domain_idd1w36d1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36d2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36e1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36e2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36e3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.52 — Restriction endonuclease-like
Superfamily Superfamily superfamilyc.52.1 — Restriction endonuclease-like
Family Family familyc.52.1.24 — Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
Domain ID domain_idd1w36f1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36f2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36f3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.52 — Restriction endonuclease-like
Superfamily Superfamily superfamilyc.52.1 — Restriction endonuclease-like
Family Family familyc.52.1.25 — Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
Domain ID domain_idd1w36g1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain
Domain ID domain_idd1w36g2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.19 — Tandem AAA-ATPase domain

CATH v4.4 (26 domains)

Domain ID domain_id1w36B01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36B02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3170 — Recbcd, chain B, domain 2
Homologous superfamily homologous superfamily10 — Recbcd, chain B, domain 2
Domain ID domain_id1w36B03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36B04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology486 — PCRA; domain 4
Homologous superfamily homologous superfamily10 — PCRA; domain 4
Domain ID domain_id1w36B05
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology320 — Lambda Exonuclease; Chain A
Homologous superfamily homologous superfamily10 —
Domain ID domain_id1w36C01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10930 —
Domain ID domain_id1w36C02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily160 —
Domain ID domain_id1w36C03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36C04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology486 — PCRA; domain 4
Homologous superfamily homologous superfamily10 — PCRA; domain 4
Domain ID domain_id1w36C06
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily990 —
Domain ID domain_id1w36D01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1020 — RecBCD complex, subunit RecD, N-terminal domain
Domain ID domain_id1w36D02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36D03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36E01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36E02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3170 — Recbcd, chain B, domain 2
Homologous superfamily homologous superfamily10 — Recbcd, chain B, domain 2
Domain ID domain_id1w36E03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36E04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology486 — PCRA; domain 4
Homologous superfamily homologous superfamily10 — PCRA; domain 4
Domain ID domain_id1w36E05
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology320 — Lambda Exonuclease; Chain A
Homologous superfamily homologous superfamily10 —
Domain ID domain_id1w36F01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10930 —
Domain ID domain_id1w36F02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily160 —
Domain ID domain_id1w36F03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36F04
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology486 — PCRA; domain 4
Homologous superfamily homologous superfamily10 — PCRA; domain 4
Domain ID domain_id1w36F06
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily990 —
Domain ID domain_id1w36G01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily1020 — RecBCD complex, subunit RecD, N-terminal domain
Domain ID domain_id1w36G02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id1w36G03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
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7. Citations (1)