1wap
TRP RNA-BINDING ATTENUATION PROTEIN IN COMPLEX WITH L-TRYPTOPHAN
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1wap |
| 沉积日期 deposition_date | 1995-02-03 |
| 结构标题 title | TRP RNA-BINDING ATTENUATION PROTEIN IN COMPLEX WITH L-TRYPTOPHAN |
| 关键词 keywords | TRP OPERON, BACILLUS SUBTILIS, RNA-BINDING ATTENUATION PROTEIN; RNA-BINDING ATTENUATION PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 36.15 Å |
| 回转半径 Rg (电子) rg_electron | 35.31 Å |
| 零角强度 I(0) i0 | 417458000.00 |
| 分子量 molecular_weight | 167470.0 kDa |
| 排除体积 excluded_volume | 210850 ų |
| 包络体积 envelope_volume | 273840 ų |
| 水化壳体积 shell_volume | 62491 ų |
| 包络直径 envelope_diameter | 105.9 Å |
| 壳层 Rg shell_rg | 43.87 Å |
| 包络 Rg envelope_rg | 33.88 Å |
| 形状 Rg shape_rg | 35.23 Å |
| 总 Rg total_rg | 36.18 Å |
| 总原子数 total_atoms | 11808 |
| 残基数 n_residues | 1480 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 101.7 Å |
| Rg (实空间) rg_real | 35.79 Å |
| Rg 误差 (实空间) rg_real_error | 0.45 Å |
| I(0) (实空间) i0_real | 4.1750e+08 |
| I(0) 误差 (实空间) i0_real_error | 6.0610e+06 |
| Rg (倒空间) rg_reciprocal | 36.02 Å |
| I(0) (倒空间) i0_reciprocal | 417500000.0000 |
| 解质量估计 total_estimate | 0.8703 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 53.2 Å |
| 偏度 Skewness skewness | -0.117 |
| 峰度 Kurtosis kurtosis | -0.507 |
| 角度范围 angular_range | — – 0.2200 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 254700000.0000 |
| 实空间数据点数 n_real_points | 45 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.894; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.958; Smooth: 0.671 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 44 domains
SCOP 2.08 (22 domains)
| 结构域编号 domain_id | d1wapa_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapc_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapd_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wape_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapf_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapg_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1waph_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapi_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapj_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapk_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapl_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapm_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapn_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapo_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapp_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapq_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapr_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1waps_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapt_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapu_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1wapv_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
CATH v4.4 (22 domains)
| 结构域编号 domain_id | 1wapA00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapC00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapD00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapE00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapG00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapH00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapI00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapJ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapK00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapL00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapM00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapN00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapO00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapP00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapQ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapR00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapS00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapT00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapU00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1wapV00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |