1wpl

Crystal structure of the inhibitory form of rat GTP cyclohydrolase I/GFRP complex

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

GTP cyclohydrolase I

Rattus norvegicus

UniProt P22288

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 GTP cyclohydrolase I feedback regulatory protein × 10 (P70552) ZINC ION × 10 7,8-DIHYDROBIOPTERIN × 10 TRIPHOSPHATE × 10 SODIUM ION × 10 water × 20 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GCH1_RAT
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–230; UniProt 12–241 Author chain B; PDBConstruct 1–230; UniProt 12–241 Author chain C; PDBConstruct 1–230; UniProt 12–241 Author chain D; PDBConstruct 1–230; UniProt 12–241 Author chain E; PDBConstruct 1–230; UniProt 12–241 Author chain F; PDBConstruct 1–230; UniProt 12–241 Author chain G; PDBConstruct 1–230; UniProt 12–241 Author chain H; PDBConstruct 1–230; UniProt 12–241 Author chain I; PDBConstruct 1–230; UniProt 12–241 Author chain J; PDBConstruct 1–230; UniProt 12–241

GTP cyclohydrolase I feedback regulatory protein

Rattus norvegicus

UniProt P70552

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 GTP cyclohydrolase I × 10 (P22288) ZINC ION × 10 7,8-DIHYDROBIOPTERIN × 10 TRIPHOSPHATE × 10 SODIUM ION × 10 water × 20 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GFRP_RAT
Isoform
PDB entities 2
Chains and sequence ranges Author chain K; PDBConstruct 1–84; UniProt 0–83 Author chain L; PDBConstruct 1–84; UniProt 0–83 Author chain M; PDBConstruct 1–84; UniProt 0–83 Author chain N; PDBConstruct 1–84; UniProt 0–83 Author chain O; PDBConstruct 1–84; UniProt 0–83 Author chain P; PDBConstruct 1–84; UniProt 0–83 Author chain Q; PDBConstruct 1–84; UniProt 0–83 Author chain R; PDBConstruct 1–84; UniProt 0–83 Author chain S; PDBConstruct 1–84; UniProt 0–83 Author chain T; PDBConstruct 1–84; UniProt 0–83

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id1wpl
Deposition date deposition_date2004-09-08
Structure title titleCrystal structure of the inhibitory form of rat GTP cyclohydrolase I/GFRP complex
Keywords keywordsENZYME-REGULATORY PROTEIN COMPLEX, HYDROLASE-PROTEIN BINDING COMPLEX; HYDROLASE/PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1wpl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1wpl__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1wpl__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)42.33 Å
Rg (electron density)41.72 Å
Total Rg41.93 Å
Atom count22420
Residues2780
Excluded volume400070 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1wpl__assembly_1__model_1 eicosameric (20) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (7)

6. Fold Classification (SCOP + CATH) 50 domains

SCOP 2.08 (20 domains)

Domain ID domain_idd1wpla_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wpld_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wple_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplg_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplh_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wpli_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplj_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1wplk_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wpll_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplm_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wpln_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplo_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplp_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplq_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplr_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wpls_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Domain ID domain_idd1wplt_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.205 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily Superfamily superfamilyd.205.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP
Family Family familyd.205.1.1 — GTP cyclohydrolase I feedback regulatory protein, GFRP

CATH v4.4 (30 domains)

Domain ID domain_id1wplA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplC01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplC02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplD01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplE02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplF01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplF02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplG01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplG02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplH01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplH02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplI01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplI02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplJ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1wplJ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1wplK00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplL00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplM00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplN00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplO00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplP00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplQ00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplR00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplS00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP
Domain ID domain_id1wplT00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1410 — Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I feedback regulatory protein GFRP

7. Citations (1)