1x0p
Structure of a cyanobacterial BLUF protein, Tll0078
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1x0p |
| 沉积日期 deposition_date | 2005-03-27 |
| 结构标题 title | Structure of a cyanobacterial BLUF protein, Tll0078 |
| 关键词 keywords | BLUF, Tll0078, FAD, STRUCTURAL GENOMICS, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 37.13 Å |
| 回转半径 Rg (电子) rg_electron | 35.96 Å |
| 零角强度 I(0) i0 | 432452000.00 |
| 分子量 molecular_weight | 164770.0 kDa |
| 排除体积 excluded_volume | 204630 ų |
| 包络体积 envelope_volume | 266400 ų |
| 水化壳体积 shell_volume | 58804 ų |
| 包络直径 envelope_diameter | 106.8 Å |
| 壳层 Rg shell_rg | 45.20 Å |
| 包络 Rg envelope_rg | 34.62 Å |
| 形状 Rg shape_rg | 35.96 Å |
| 总 Rg total_rg | 36.53 Å |
| 总原子数 total_atoms | 11540 |
| 残基数 n_residues | 1399 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 105.9 Å |
| Rg (实空间) rg_real | 36.79 Å |
| Rg 误差 (实空间) rg_real_error | 0.51 Å |
| I(0) (实空间) i0_real | 4.3250e+08 |
| I(0) 误差 (实空间) i0_real_error | 6.9850e+06 |
| Rg (倒空间) rg_reciprocal | 37.01 Å |
| I(0) (倒空间) i0_reciprocal | 432500000.0000 |
| 解质量估计 total_estimate | 0.9042 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 54.2 Å |
| 偏度 Skewness skewness | -0.104 |
| 峰度 Kurtosis kurtosis | -0.674 |
| 角度范围 angular_range | — – 0.2150 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 83490000.0000 |
| 实空间数据点数 n_real_points | 44 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.954; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.911 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 30 domains
SCOP 2.08 (10 domains)
| 结构域编号 domain_id | d1x0pa1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pb_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pc_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pd_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pe_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pf_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pg_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0ph_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pi_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
| 结构域编号 domain_id | d1x0pj_ |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.58 — Ferredoxin-like |
| 超家族 Superfamily superfamily | d.58.10 — Acylphosphatase/BLUF domain-like |
| 家族 Family family | d.58.10.2 — BLUF domain |
CATH v4.4 (20 domains)
| 结构域编号 domain_id | 1x0pA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pB02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pD01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pD02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pE01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pE02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pF01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pF02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pG01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pG02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pH01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pH02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pI01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pI02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |
| 结构域编号 domain_id | 1x0pJ01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 70 — Alpha-Beta Plaits |
| 同源超家族 H-superfamily homologous superfamily | 100 — |
| 结构域编号 domain_id | 1x0pJ02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 1540 — |