1yc6

Crystallographic Structure of the T=1 Particle of Brome Mosaic Virus

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Coat protein

物种未注明

UniProt P03602

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 60 water × 60 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COAT_BMV
Isoform —
PDB实体 1
链与序列区间 作者链 1; PDB构建体 1–154; UniProt 36–189 作者链 2; PDB构建体 1–154; UniProt 36–189 作者链 3; PDB构建体 1–154; UniProt 36–189 作者链 4; PDB构建体 1–154; UniProt 36–189 作者链 A; PDB构建体 1–154; UniProt 36–189 作者链 B; PDB构建体 1–154; UniProt 36–189 作者链 C; PDB构建体 1–154; UniProt 36–189 作者链 D; PDB构建体 1–154; UniProt 36–189 作者链 E; PDB构建体 1–154; UniProt 36–189 作者链 F; PDB构建体 1–154; UniProt 36–189 作者链 G; PDB构建体 1–154; UniProt 36–189 作者链 H; PDB构建体 1–154; UniProt 36–189 作者链 I; PDB构建体 1–154; UniProt 36–189 作者链 J; PDB构建体 1–154; UniProt 36–189 作者链 K; PDB构建体 1–154; UniProt 36–189 作者链 L; PDB构建体 1–154; UniProt 36–189 作者链 M; PDB构建体 1–154; UniProt 36–189 作者链 N; PDB构建体 1–154; UniProt 36–189 作者链 O; PDB构建体 1–154; UniProt 36–189 作者链 P; PDB构建体 1–154; UniProt 36–189 作者链 Q; PDB构建体 1–154; UniProt 36–189 作者链 R; PDB构建体 1–154; UniProt 36–189 作者链 S; PDB构建体 1–154; UniProt 36–189 作者链 T; PDB构建体 1–154; UniProt 36–189 作者链 U; PDB构建体 1–154; UniProt 36–189 作者链 V; PDB构建体 1–154; UniProt 36–189 作者链 W; PDB构建体 1–154; UniProt 36–189 作者链 X; PDB构建体 1–154; UniProt 36–189 作者链 Y; PDB构建体 1–154; UniProt 36–189 作者链 Z; PDB构建体 1–154; UniProt 36–189

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1yc6
沉积日期 deposition_date2004-12-22
结构标题 titleCrystallographic Structure of the T=1 Particle of Brome Mosaic Virus
关键词 keywordsStructural Transition, Proteolysis, BMV, AlMV, Symmetry, Assembly, Icosahedral virus, Virus; VIRUS
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1yc6__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1yc6__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1yc6__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)76.29 Å
Rg(电子密度)75.41 Å
总 Rg75.66 Å
原子数69600
残基数9240
排除体积1253000 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1yc6__assembly_1__model_1 60-meric (60) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (2)

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6. 折叠分类 (SCOP + CATH) 60 domains

SCOP 2.08 (30 domains)

结构域编号 domain_idd1yc61_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc62_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc63_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc64_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6a_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6b_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6c_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6d_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6e_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6f_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6g_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6h_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6i_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6j_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6k_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6l_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6m_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6n_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6o_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6p_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6q_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6r_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6s_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6t_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6u_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6v_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6w_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6x_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6y_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP
结构域编号 domain_idd1yc6z_
类 Class classb — All beta proteins
折叠类型 Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
家族 Family familyb.121.4.5 — Bromoviridae-like VP

CATH v4.4 (30 domains)

结构域编号 domain_id1yc6100
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6200
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6300
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6400
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6A00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6B00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6C00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6D00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6E00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6F00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6G00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6H00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6I00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6J00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6K00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6L00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6M00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6N00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6O00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6P00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6Q00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6R00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6S00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6T00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6U00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6V00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6W00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6X00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6Y00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
结构域编号 domain_id1yc6Z00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily220 — Satellite virus coat domain
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7. 引用文献 (3)