Caenorhabditis elegans
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | water × 1 | Consistent with protein count |
| UniProt name | UBC1_CAEEL |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 4–157； UniProt 1–154 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1z3d |
| Deposition date deposition_date | 2005-03-11 |
| Structure title title | Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans |
| Keywords keywords | ;E2, Ubiquitination, Ubiquitin-conjugating, crystal growth, Structural Genomics, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, SECSG, LIGASE ;; LIGASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 17.27 Å |
| Rg (electron density) | 15.99 Å |
| Total Rg | 17.10 Å |
| Atom count | 1225 |
| Residues | 151 |
| Excluded volume | 21671 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1z3da_ |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.20 — UBC-like |
| Superfamily Superfamily superfamily | d.20.1 — UBC-like |
| Family Family family | d.20.1.1 — UBC-related |
| Domain ID domain_id | 1z3dA00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 10 — Roll |
| Topology topology | 110 — Ubiquitin Conjugating Enzyme |
| Homologous superfamily homologous superfamily | 10 — Ubiquitin Conjugating Enzyme |