1ztm
Structure of the Uncleaved Paramyxovirus (hPIV3) Fusion Protein
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1ztm |
| 沉积日期 deposition_date | 2005-05-27 |
| 结构标题 title | Structure of the Uncleaved Paramyxovirus (hPIV3) Fusion Protein |
| 关键词 keywords | fusion protein, 6-helix bundle, trimer, post-fusion, Viral protein; VIRAL PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 45.70 Å |
| 回转半径 Rg (电子) rg_electron | 46.28 Å |
| 零角强度 I(0) i0 | 268681000.00 |
| 分子量 molecular_weight | 134150.0 kDa |
| 排除体积 excluded_volume | 168160 ų |
| 包络体积 envelope_volume | 227120 ų |
| 水化壳体积 shell_volume | 48740 ų |
| 包络直径 envelope_diameter | 170.2 Å |
| 壳层 Rg shell_rg | 41.94 Å |
| 包络 Rg envelope_rg | 46.89 Å |
| 形状 Rg shape_rg | 46.27 Å |
| 总 Rg total_rg | 46.11 Å |
| 总原子数 total_atoms | 9431 |
| 残基数 n_residues | 1258 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 161.0 Å |
| Rg (实空间) rg_real | 46.92 Å |
| Rg 误差 (实空间) rg_real_error | 1.89 Å |
| I(0) (实空间) i0_real | 2.6870e+08 |
| I(0) 误差 (实空间) i0_real_error | 5.4740e+06 |
| Rg (倒空间) rg_reciprocal | 45.71 Å |
| I(0) (倒空间) i0_reciprocal | 268300000.0000 |
| 解质量估计 total_estimate | 0.6633 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 41.4 Å |
| 偏度 Skewness skewness | 0.862 |
| 峰度 Kurtosis kurtosis | 0.043 |
| 角度范围 angular_range | — – 0.1750 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 19670000.0000 |
| 实空间数据点数 n_real_points | 36 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.367; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.441; Smooth: 0.079 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 12 domains
CATH v4.4 (12 domains)
| 结构域编号 domain_id | 1ztmA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1ztmA02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1ztmA03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1ztmA04 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 770 — YojJ-like |
| 结构域编号 domain_id | 1ztmB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1ztmB02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1ztmB03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1ztmB04 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 770 — YojJ-like |
| 结构域编号 domain_id | 1ztmC01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 490 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Newcastle disease virus like domain |
| 结构域编号 domain_id | 1ztmC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 2480 — |
| 结构域编号 domain_id | 1ztmC03 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 1690 — Head and neck region of the ectodomain of NDV fusion glycoprotein |
| 结构域编号 domain_id | 1ztmC04 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 770 — YojJ-like |