2a1k
RB69 single-stranded DNA binding protein core domain
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2a1k |
| 沉积日期 deposition_date | 2005-06-20 |
| 结构标题 title | RB69 single-stranded DNA binding protein core domain |
| 关键词 keywords | Zn2+ binding subdomain, 5-stranded beta-sheet, OB fold, single-stranded DNA binding, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 26.79 Å |
| 回转半径 Rg (电子) rg_electron | 25.89 Å |
| 零角强度 I(0) i0 | 40050700.00 |
| 分子量 molecular_weight | 48842.0 kDa |
| 排除体积 excluded_volume | 61152 ų |
| 包络体积 envelope_volume | 80258 ų |
| 水化壳体积 shell_volume | 26634 ų |
| 包络直径 envelope_diameter | 86.8 Å |
| 壳层 Rg shell_rg | 32.35 Å |
| 包络 Rg envelope_rg | 25.60 Å |
| 形状 Rg shape_rg | 25.90 Å |
| 总 Rg total_rg | 26.67 Å |
| 总原子数 total_atoms | 3436 |
| 残基数 n_residues | 427 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 83.7 Å |
| Rg (实空间) rg_real | 26.76 Å |
| Rg 误差 (实空间) rg_real_error | 0.60 Å |
| I(0) (实空间) i0_real | 4.0050e+07 |
| I(0) 误差 (实空间) i0_real_error | 6.0800e+05 |
| Rg (倒空间) rg_reciprocal | 26.77 Å |
| I(0) (倒空间) i0_reciprocal | 40050000.0000 |
| 解质量估计 total_estimate | 0.9061 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 34.1 Å |
| 偏度 Skewness skewness | 0.280 |
| 峰度 Kurtosis kurtosis | -0.397 |
| 角度范围 angular_range | — – 0.2950 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 4573000.0000 |
| 实空间数据点数 n_real_points | 60 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.945 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 4 domains
SCOP 2.08 (2 domains)
| 结构域编号 domain_id | d2a1ka_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.40 — OB-fold |
| 超家族 Superfamily superfamily | b.40.4 — Nucleic acid-binding proteins |
| 家族 Family family | b.40.4.7 — Phage ssDNA-binding proteins |
| 结构域编号 domain_id | d2a1kb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.40 — OB-fold |
| 超家族 Superfamily superfamily | b.40.4 — Nucleic acid-binding proteins |
| 家族 Family family | b.40.4.7 — Phage ssDNA-binding proteins |
CATH v4.4 (2 domains)
| 结构域编号 domain_id | 2a1kA00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 198 — Replication Fork Single-Stranded DNA Binding Protein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Replication Fork Single-Stranded Dna Binding Protein |
| 结构域编号 domain_id | 2a1kB00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 198 — Replication Fork Single-Stranded DNA Binding Protein |
| 同源超家族 H-superfamily homologous superfamily | 10 — Replication Fork Single-Stranded Dna Binding Protein |