2au3

Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA primase

Aquifex aeolicus

UniProt O67465

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 ZINC ION × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRIM_AQUAE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–407; UniProt 1–405

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2au3
Deposition date deposition_date2005-08-26
Structure title titleCrystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
Keywords keywordsZinc Ribbon, TOPRIM, RNA POLYMERASE, DNA REPLICATION, TRANSFERASE; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2au3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2au3__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2au3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)25.26 Å
Rg (electron density)24.51 Å
Total Rg25.36 Å
Atom count3261
Residues403
Excluded volume58703 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2au3__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id2au3A01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology580 — DNA Primase; Chain A
Homologous superfamily homologous superfamily10 — Zinc finger, CHC2-type domain
Domain ID domain_id2au3A02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology980 — DNA primase DNAg catalytic core, N-terminal domain
Homologous superfamily homologous superfamily10 — DNA primase, catalytic core, N-terminal domain
Domain ID domain_id2au3A03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology1360 — Dna Topoisomerase Vi A Subunit; Chain: A, domain 2
Homologous superfamily homologous superfamily10 —
Domain ID domain_id2au3A04
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology50 — Pheromone ER-1
Homologous superfamily homologous superfamily30 —
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7. Citations (1)