2ba2
Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2ba2 |
| 沉积日期 deposition_date | 2005-10-13 |
| 结构标题 title | Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae |
| 关键词 keywords | ;DUF16, MPN010, hypothetical protein, coiled-coil, stutter, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center, BSGC, UNKNOWN FUNCTION ;; STRUCTURAL GENOMICS, UNKNOWN FUNCTION |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 34.02 Å |
| 回转半径 Rg (电子) rg_electron | 35.18 Å |
| 零角强度 I(0) i0 | 13066500.00 |
| 分子量 molecular_weight | 27992.0 kDa |
| 排除体积 excluded_volume | 35145 ų |
| 包络体积 envelope_volume | 46804 ų |
| 水化壳体积 shell_volume | 14571 ų |
| 包络直径 envelope_diameter | 123.5 Å |
| 壳层 Rg shell_rg | 30.90 Å |
| 包络 Rg envelope_rg | 35.96 Å |
| 形状 Rg shape_rg | 35.15 Å |
| 总 Rg total_rg | 34.84 Å |
| 总原子数 total_atoms | 1970 |
| 残基数 n_residues | 242 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 118.8 Å |
| Rg (实空间) rg_real | 34.91 Å |
| Rg 误差 (实空间) rg_real_error | 1.75 Å |
| I(0) (实空间) i0_real | 1.3070e+07 |
| I(0) 误差 (实空间) i0_real_error | 2.3290e+05 |
| Rg (倒空间) rg_reciprocal | 34.36 Å |
| I(0) (倒空间) i0_reciprocal | 13060000.0000 |
| 解质量估计 total_estimate | 0.5713 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 17.7 Å |
| 偏度 Skewness skewness | 0.708 |
| 峰度 Kurtosis kurtosis | -0.327 |
| 角度范围 angular_range | — – 0.2350 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 522600.0000 |
| 实空间数据点数 n_real_points | 48 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.095; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.011; Smooth: 0.129 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 6 domains
SCOP 2.08 (3 domains)
| 结构域编号 domain_id | d2ba2a1 |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.1 — Parallel coiled-coil |
| 超家族 Superfamily superfamily | h.1.30 — MPN010-like |
| 家族 Family family | h.1.30.1 — MPN010-like |
| 结构域编号 domain_id | d2ba2b_ |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.1 — Parallel coiled-coil |
| 超家族 Superfamily superfamily | h.1.30 — MPN010-like |
| 家族 Family family | h.1.30.1 — MPN010-like |
| 结构域编号 domain_id | d2ba2c_ |
| 类 Class class | h — Coiled coil proteins |
| 折叠类型 Fold fold | h.1 — Parallel coiled-coil |
| 超家族 Superfamily superfamily | h.1.30 — MPN010-like |
| 家族 Family family | h.1.30.1 — MPN010-like |
CATH v4.4 (3 domains)
| 结构域编号 domain_id | 2ba2A00 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 40 — |
| 结构域编号 domain_id | 2ba2B00 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 40 — |
| 结构域编号 domain_id | 2ba2C00 |
| 类 Class class | 6 — Special |
| 架构 Architecture architecture | 10 — Helix non-globular |
| 拓扑 Topology topology | 250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces |
| 同源超家族 H-superfamily homologous superfamily | 40 — |