Diaphanous protein homolog 1
Mus musculus
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count | Chain A; UniProt 135–451 Chain C; UniProt 1145–1200 | Fragment:mDia1 N-terminal regulatory domain Fragment:mDia1 autoregulatory domain, DAD | No other associated polymer | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.1;293 K;3.7 M NaFormiate pH 7.1, 100 mM HEPES pH 7.1, 4% (w/v) PEG5000-MME, VAPOR DIFFUSION, HANGING DROP, temperature 293K | Resolution 3.30 Å R-free 0.364 |
| 2 | Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count | Chain B; UniProt 135–451 Chain D; UniProt 1145–1200 | Fragment:mDia1 N-terminal regulatory domain Fragment:mDia1 autoregulatory domain, DAD | No other associated polymer | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.1;293 K;3.7 M NaFormiate pH 7.1, 100 mM HEPES pH 7.1, 4% (w/v) PEG5000-MME, VAPOR DIFFUSION, HANGING DROP, temperature 293K | Resolution 3.30 Å R-free 0.364 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 2BAP | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1V9D Crystal structure of the core FH2 domain of mouse mDia1 Deposited 2004-01-24 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
826–1163(338 aa)
Fragment:core FH2 domain
Chain B
826–1163(338 aa)
Fragment:core FH2 domain
Chain C
826–1163(338 aa)
Fragment:core FH2 domain
Chain D
826–1163(338 aa)
Fragment:core FH2 domain
|
Not recorded | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.3;293 K;PEG3350, sodium sulfate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å R-free 0.267 |
| 1Z2C Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP Deposited 2005-03-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain B
69–451(383 aa)
|
Not recorded | MG MAGNESIUM ION × 4 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;293 K;PEG 2000-MME, magnesium sulphate, Tris buffer, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.285 |
| 1Z2C Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP Deposited 2005-03-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain D
69–451(383 aa)
|
Not recorded | MG MAGNESIUM ION × 2 GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;293 K;PEG 2000-MME, magnesium sulphate, Tris buffer, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.285 |
| 2BNX Crystal structure of the dimeric regulatory domain of mouse diaphaneous-related formin (DRF), mDia1 Deposited 2005-04-05 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
131–516(386 aa)
Fragment:AMINO-TERMINAL DOMAIN, RESIDUES 131-516
Chain B
131–516(386 aa)
Fragment:AMINO-TERMINAL DOMAIN, RESIDUES 131-516
|
Not recorded | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.25;HANGING DROP VAPOR DIFFUSION; PROTEIN: 11 MG/ML IN 100 MM HEPES, PH 7.25; RESERVOIR: 100 MM HEPES, PH 7.25, 9% PEG3350
|
Resolution 2.40 Å R-free 0.236 |
| 2F31 Crystal structure of the autoinhibitory switch in Formin mDia1; the DID/DAD complex Deposited 2005-11-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
135–367(233 aa)
Chain B
1177–1196(20 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;293 K;0.1 M sodium citrate, 200 mM ammonium sulfate, 25% PEG 4000, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.312 |
| 2F31 Crystal structure of the autoinhibitory switch in Formin mDia1; the DID/DAD complex Deposited 2005-11-18 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
135–367(233 aa)
Chain B
1177–1196(20 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;293 K;0.1 M sodium citrate, 200 mM ammonium sulfate, 25% PEG 4000, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.312 |
| 2V8F Mouse Profilin IIa in complex with a double repeat from the FH1 domain of mDia1 Deposited 2007-08-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain C
635–655(21 aa)
Fragment:FH1 DOMAIN, RESIDUES 635-655
|
Not recorded | SO4 SULFATE ION × 5 NA SODIUM ION × 1 GOL GLYCEROL × 1 IPA ISOPROPYL ALCOHOL × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.10 Å R-free 0.173 |
| 3EG5 Crystal structure of MDIA1-TSH GBD-FH3 in complex with CDC42-GMPPNP Deposited 2008-09-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain B
69–451(383 aa)
Fragment:MDIAN-TSH, UNP residues 69-451
Chain D
69–451(383 aa)
Fragment:MDIAN-TSH, UNP residues 69-451
|
Mutation:N164T, N165S, N166H Mutation:N164T, N165S, N166H | GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2 MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.8;293 K;Bis-Tris-Propane (PH 8.8 adjusted with citric acid), 26% (w/v) PEG 3350, 250mM Na-Tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.70 Å R-free 0.243 |
| 3O4X Crystal structure of complex between amino and carboxy terminal fragments of mDia1 Deposited 2010-07-27 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
131–458(328 aa)
Fragment:mDia1 N-terminal regulatory domain (unp residues 131-458)
Chain D
131–458(328 aa)
Fragment:mDia1 N-terminal regulatory domain (unp residues 131-458)
Chain E
736–1200(465 aa)
Fragment:mDia1 C-terminal FH2-DAD domain (unp residues 736-1200)
Chain H
736–1200(465 aa)
Fragment:mDia1 C-terminal FH2-DAD domain (unp residues 736-1200)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;313 K;Peg 4000, sodium malonate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 313K
|
Resolution 3.20 Å R-free 0.298 |
| 3O4X Crystal structure of complex between amino and carboxy terminal fragments of mDia1 Deposited 2010-07-27 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain B
131–458(328 aa)
Fragment:mDia1 N-terminal regulatory domain (unp residues 131-458)
Chain C
131–458(328 aa)
Fragment:mDia1 N-terminal regulatory domain (unp residues 131-458)
Chain F
736–1200(465 aa)
Fragment:mDia1 C-terminal FH2-DAD domain (unp residues 736-1200)
Chain G
736–1200(465 aa)
Fragment:mDia1 C-terminal FH2-DAD domain (unp residues 736-1200)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;313 K;Peg 4000, sodium malonate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 313K
|
Resolution 3.20 Å R-free 0.298 |
| 3OBV Autoinhibited Formin mDia1 Structure Deposited 2010-08-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Homooligomer;Protein × 4 PDB declaration: dimeric |
Chain A
131–457(327 aa)
Fragment:N-terminal fragment, UNP residues 131-457
Chain B
131–457(327 aa)
Fragment:N-terminal fragment, UNP residues 131-457
Chain E
753–1209(457 aa)
Fragment:C-terminal fragment, UNP residues 753-1209
Chain F
753–1209(457 aa)
Fragment:C-terminal fragment, UNP residues 753-1209
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75;293 K;10% PEG 1500, 25% sucrose, 0.1 M MES pH 6.75, 0.15 M NaCl, 1 mM DTT, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.75 Å R-free 0.261 |
| 3OBV Autoinhibited Formin mDia1 Structure Deposited 2010-08-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Other combination Homooligomer;Protein × 4 PDB declaration: dimeric |
Chain C
131–457(327 aa)
Fragment:N-terminal fragment, UNP residues 131-457
Chain D
131–457(327 aa)
Fragment:N-terminal fragment, UNP residues 131-457
Chain G
753–1209(457 aa)
Fragment:C-terminal fragment, UNP residues 753-1209
Chain H
753–1209(457 aa)
Fragment:C-terminal fragment, UNP residues 753-1209
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75;293 K;10% PEG 1500, 25% sucrose, 0.1 M MES pH 6.75, 0.15 M NaCl, 1 mM DTT, vapor diffusion, hanging drop, temperature 293K
|
Resolution 2.75 Å R-free 0.261 |
| 4UWX Structure of liprin-alpha3 in complex with mDia1 Diaphanous- inhibitory domain Deposited 2014-08-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain A
135–369(235 aa)
Fragment:DIAPHANOUS-INHIBITORY DOMAIN, RESIDUES 135-369
|
Not recorded | NI NICKEL (II) ION × 1 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;0.2 M NACL, 0.1 M TRIS/HCL PH 8.0, 20% PEG6000
|
Resolution 1.65 Å R-free 0.210 |
| 4UWX Structure of liprin-alpha3 in complex with mDia1 Diaphanous- inhibitory domain Deposited 2014-08-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric |
Chain B
135–369(235 aa)
Fragment:DIAPHANOUS-INHIBITORY DOMAIN, RESIDUES 135-369
|
Not recorded | NI NICKEL (II) ION × 1 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;0.2 M NACL, 0.1 M TRIS/HCL PH 8.0, 20% PEG6000
|
Resolution 1.65 Å R-free 0.210 |
| 8RU2 Structure of the F-actin barbed end bound by formin mDia1 Deposited 2024-01-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer;Protein × 5 PDB declaration: pentameric |
Chain E
552–584(33 aa)
Chain E
721–1255(535 aa)
Chain F
552–584(33 aa)
Chain F
721–1255(535 aa)
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 3 MG MAGNESIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.1
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE;3 seconds, force 0.
|
Resolution 3.49 Å |
| 9B27 Dia1 at the Barbed End of F-Actin Deposited 2024-03-14 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 8 PDB declaration: octameric |
Chain G
745–1166(422 aa)
Chain H
745–1166(422 aa)
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 6 MG MAGNESIUM ION × 6 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.51 Å |
| 9B3D mDia1 in the middle of F-actin Deposited 2024-03-19 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 8 PDB declaration: octameric |
Chain G
745–1143(399 aa)
Chain H
745–1143(399 aa)
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 6 MG MAGNESIUM ION × 6 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;20mM HEPES, 50mM NaCL, 1mM EDTA, 1mM DTT, 0.05% Thesit
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.41 Å |
12 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | DIAP1_MOUSE |
| Isoform | — |
| PDB entities | 1, 2 |
| Chains and sequence ranges | Author chain A; PDBConstruct 1–317; UniProt 135–451 Author chain B; PDBConstruct 1–317; UniProt 135–451 Author chain C; PDBConstruct 1–56; UniProt 1145–1200 Author chain D; PDBConstruct 1–56; UniProt 1145–1200 |