2bcc

STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN

Method: X-RAY DIFFRACTION

SAXS 散射曲线 SAXS Profile

暂无 SAXS 图

P(r) 距离分布 P(r) Distribution

暂无 P(r) 图

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	2bcc
沉积日期 deposition_date	1998-09-18
结构标题 title	STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN
关键词 keywords	UBIQUINONE, OXIDOREDUCTASE, REDOX ENZYME, MEMBRANE PROTEIN, RESPIRATORY CHAIN, STIGMATELLIN; OXIDOREDUCTASE
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

该条目暂无 SAXS 数据。

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

该条目暂无 P(r) 分析数据。

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (16)

Entity 1 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	49795.9 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A
原子数 atom_count	15754

TAYYAQALQSVPETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHREDGLPLAHVAIAVEGPGWAHPDLVALQVANAIIGHYDRTYGGGLHSSSPLASIAVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCTSISESEVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYIYDQCPAVAGPGPIEQLPDYNRIRSGMFWLRF

Entity 2 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	45091.7 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

PPHPQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMALVGLGVSHPVLKNVAEQLLNIRGGLGLSGAKAKYRGGEIREQNGDSLVHAAIVAESAAIGGAEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLKAKYLMSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNLGHTPFVDEL

Entity 3 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	42623.0 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MAPNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFPTIGTLENKMLNY

Entity 4 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	27357.2 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

SDLELHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIYNDVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLVPLVYYMKRHKWSVLKSRKLAYRPPK

Entity 5 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	21739.7 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG

Entity 6 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	13400.1 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

AGRPAVSASSRWLEGIRKWYYNAAGFNKYGLMRDDTIYENDDVKEAIRRLPENLYDDRMFRIKRALDLNMRQQILPKEQWTKYEEDVPYLEPYLKEVIRERKEREEWDK

Entity 7 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	9715.2 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

GRQFGHLTRVRHLITYSLSPFEQRPFPHYFSKGVPNVWRRLRACILRVAPPFLAFYLLYTWGTQEFEKSKRKNPAAYVNDR

Entity 8 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	9223.1 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

GDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHKLFNSLK

Entity 9 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	2826.5 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 10 polymer

描述 description	UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
分子量 formula_weight	7175.3 kDa
EC 编号 ec_number	1.10.2.2
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

VAPTLTARLYSLLFRRTSTFALTIVVGALLFERAFDQGADAIYEHINEGKLWKHIKHKYENK

Entity 11 non-polymer

描述 description	PROTOPORPHYRIN IX CONTAINING FE
分子量 formula_weight	616.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	3

Entity 12 non-polymer

描述 description	UBIQUINONE-10
分子量 formula_weight	863.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 13 non-polymer

描述 description	1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
分子量 formula_weight	744.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 14 non-polymer

描述 description	STIGMATELLIN
分子量 formula_weight	482.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 15 non-polymer

描述 description	octyl beta-D-glucopyranoside
分子量 formula_weight	292.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

Entity 16 non-polymer

描述 description	FE2/S2 (INORGANIC) CLUSTER
分子量 formula_weight	175.8 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

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6. 折叠分类 (SCOP + CATH) 27 domains

SCOP 2.08 (14 domains)

结构域编号 domain_id	d2bcca1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.185 — LuxS/MPP-like metallohydrolase
超家族 Superfamily superfamily	d.185.1 — LuxS/MPP-like metallohydrolase
家族 Family family	d.185.1.1 — MPP-like

结构域编号 domain_id	d2bcca2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.185 — LuxS/MPP-like metallohydrolase
超家族 Superfamily superfamily	d.185.1 — LuxS/MPP-like metallohydrolase
家族 Family family	d.185.1.1 — MPP-like

结构域编号 domain_id	d2bccb1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.185 — LuxS/MPP-like metallohydrolase
超家族 Superfamily superfamily	d.185.1 — LuxS/MPP-like metallohydrolase
家族 Family family	d.185.1.1 — MPP-like

结构域编号 domain_id	d2bccb2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.185 — LuxS/MPP-like metallohydrolase
超家族 Superfamily superfamily	d.185.1 — LuxS/MPP-like metallohydrolase
家族 Family family	d.185.1.1 — MPP-like

结构域编号 domain_id	d2bccc2
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.32 — a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
超家族 Superfamily superfamily	f.32.1 — a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
家族 Family family	f.32.1.1 — a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

结构域编号 domain_id	d2bccc3
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.21 — Heme-binding four-helical bundle
超家族 Superfamily superfamily	f.21.1 — Transmembrane di-heme cytochromes
家族 Family family	f.21.1.2 — Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

结构域编号 domain_id	d2bccd2
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.3 — Cytochrome c
超家族 Superfamily superfamily	a.3.1 — Cytochrome c
家族 Family family	a.3.1.3 — Cytochrome bc1 domain

结构域编号 domain_id	d2bccd3
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.23 — Single transmembrane helix
超家族 Superfamily superfamily	f.23.11 — Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
家族 Family family	f.23.11.1 — Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor

结构域编号 domain_id	d2bcce1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.33 — ISP domain
超家族 Superfamily superfamily	b.33.1 — ISP domain
家族 Family family	b.33.1.1 — Rieske iron-sulfur protein (ISP)

结构域编号 domain_id	d2bcce2
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.23 — Single transmembrane helix
超家族 Superfamily superfamily	f.23.12 — ISP transmembrane anchor
家族 Family family	f.23.12.1 — ISP transmembrane anchor

结构域编号 domain_id	d2bccf_
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.27 — 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
超家族 Superfamily superfamily	f.27.1 — 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
家族 Family family	f.27.1.1 — 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

结构域编号 domain_id	d2bccg_
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.23 — Single transmembrane helix
超家族 Superfamily superfamily	f.23.13 — Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
家族 Family family	f.23.13.1 — Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

结构域编号 domain_id	d2bcch_
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.28 — Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
超家族 Superfamily superfamily	f.28.1 — Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
家族 Family family	f.28.1.1 — Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

结构域编号 domain_id	d2bccj_
类 Class class	f — Membrane and cell surface proteins and peptides
折叠类型 Fold fold	f.23 — Single transmembrane helix
超家族 Superfamily superfamily	f.23.14 — Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
家族 Family family	f.23.14.1 — Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

CATH v4.4 (13 domains)

结构域编号 domain_id	2bccA01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	10 — Metalloenzyme, LuxS/M16 peptidase-like

结构域编号 domain_id	2bccA02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	10 — Metalloenzyme, LuxS/M16 peptidase-like

结构域编号 domain_id	2bccB01
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	10 — Metalloenzyme, LuxS/M16 peptidase-like

结构域编号 domain_id	2bccB02
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily	10 — Metalloenzyme, LuxS/M16 peptidase-like

结构域编号 domain_id	2bccC00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	810 — Cytochrome Bc1 Complex; Chain C
同源超家族 H-superfamily homologous superfamily	10 — Cytochrome Bc1 Complex; Chain C

结构域编号 domain_id	2bccD01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	100 — Cytochrome c1, transmembrane anchor, C-terminal

结构域编号 domain_id	2bccD02
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	760 — Cytochrome Bc1 Complex; Chain D, domain 2
同源超家族 H-superfamily homologous superfamily	10 — Cytochrome c-like domain

结构域编号 domain_id	2bccE01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	270 — Ubiquinol cytochrome reductase, transmembrane domain

结构域编号 domain_id	2bccE02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	102 — 3-layer Sandwich
拓扑 Topology topology	10 — Rieske Iron-sulfur Protein
同源超家族 H-superfamily homologous superfamily	10 — Rieske [2Fe-2S] iron-sulphur domain

结构域编号 domain_id	2bccF00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	1090 — Cytochrome Bc1 Complex; Chain F
同源超家族 H-superfamily homologous superfamily	10 — Cytochrome b-c1 complex subunit 7

结构域编号 domain_id	2bccG00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	210 — Cytochrome b-c1 complex subunit 8

结构域编号 domain_id	2bccH00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily	20 — Ubiquinol-cytochrome C reductase hinge domain

结构域编号 domain_id	2bccJ00
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	20 — Up-down Bundle
拓扑 Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily	260 — Cytochrome b-c1 complex subunit 9

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7. 引用文献 (2)

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晶胞边长 a length_a	173.460 Å
晶胞边长 b length_b	182.450 Å
晶胞边长 c length_c	241.330 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	8

空间群 space_group	P 21 21 21
空间群编号 int_tables_number	19
晶系 crystal_system	—

分辨率 resolution	3.500 Å
最低分辨率 resolution_low	12.000 Å
R 因子 r_factor	0.2840
R_work r_work	0.2840
R_free r_free	0.3170

STIGMATELLIN-BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (16)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 non-polymer

Entity 12 non-polymer

Entity 13 non-polymer

Entity 14 non-polymer

Entity 15 non-polymer

Entity 16 non-polymer

6. 折叠分类 (SCOP + CATH) 27 domains

SCOP 2.08 (14 domains)

CATH v4.4 (13 domains)

7. 引用文献 (2)

8. 文件与曲线 (0)