2bs3

GLU C180 -> GLN VARIANT QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES

Method: X-RAY DIFFRACTION

1. Protein Identity and Related Structures Protein Identity & Related Structures

QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A

OrganismNot specified

UniProt P17412

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B × 2 (P17596) QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C × 2 (P17413) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 FE3-S4 CLUSTER × 2 IRON/SULFUR CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 DODECYL-BETA-D-MALTOSIDE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDA_WOLSU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–656; UniProt 1–656 Author chain D; PDBConstruct 1–656; UniProt 1–656

QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B

OrganismNot specified

UniProt P17596

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A × 2 (P17412) QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C × 2 (P17413) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 FE3-S4 CLUSTER × 2 IRON/SULFUR CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 DODECYL-BETA-D-MALTOSIDE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDB_WOLSU
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–239; UniProt 1–239 Author chain E; PDBConstruct 1–239; UniProt 1–239

QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C

OrganismNot specified

UniProt P17413

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A × 2 (P17412) QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B × 2 (P17596) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 FE3-S4 CLUSTER × 2 IRON/SULFUR CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 DODECYL-BETA-D-MALTOSIDE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FRDC_WOLSU
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–256; UniProt 1–256 Author chain F; PDBConstruct 1–256; UniProt 1–256

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id2bs3
Deposition date deposition_date2005-05-14
Structure title titleGLU C180 -> GLN VARIANT QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES
Keywords keywords;OXIDOREDUCTASE, 2FE-2S, 3FE-4S, 4FE-4S, CITRIC ACID CYCLE, DIHAEM CYTOCHROME B, ELECTRON TRANSPORT, FAD, FLAVOPROTEIN, FUMARATE REDUCTASE, HEME, ION-SULPHUR PROTEIN, IRON, IRON- SULFUR, METAL-BINDING, RESPIRATORY CHAIN, SUCCINATE DEHYDROGENASE, TRANSMEMBRANE, TRICARBOXYLIC ACID CYCLE ;; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2bs3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2bs3__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2bs3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)43.77 Å
Rg (electron density)43.68 Å
Total Rg43.57 Å
Atom count18552
Residues2300
Excluded volume331820 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2bs3__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (12)

6. Fold Classification (SCOP + CATH) 26 domains

SCOP 2.08 (12 domains)

Domain ID domain_idd2bs3a1
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Domain ID domain_idd2bs3a2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.3 — FAD/NAD(P)-binding domain
Superfamily Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
Family Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Domain ID domain_idd2bs3a3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_idd2bs3b1
Class classa — All alpha proteins
Fold Fold folda.1 — Globin-like
Superfamily Superfamily superfamilya.1.2 — alpha-helical ferredoxin
Family Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
Domain ID domain_idd2bs3b2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
Family Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
Domain ID domain_idd2bs3c1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.1 — Fumarate reductase respiratory complex cytochrome b subunit, FrdC
Domain ID domain_idd2bs3d1
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Domain ID domain_idd2bs3d2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.3 — FAD/NAD(P)-binding domain
Superfamily Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
Family Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Domain ID domain_idd2bs3d3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_idd2bs3e1
Class classa — All alpha proteins
Fold Fold folda.1 — Globin-like
Superfamily Superfamily superfamilya.1.2 — alpha-helical ferredoxin
Family Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
Domain ID domain_idd2bs3e2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
Family Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
Domain ID domain_idd2bs3f_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.21 — Heme-binding four-helical bundle
Superfamily Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
Family Family familyf.21.2.1 — Fumarate reductase respiratory complex cytochrome b subunit, FrdC

CATH v4.4 (14 domains)

Domain ID domain_id2bs3A01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology50 — FAD/NAD(P)-binding domain
Homologous superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
Domain ID domain_id2bs3A02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology700 — Flavocytochrome C3; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_id2bs3A03
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
Domain ID domain_id2bs3A04
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily820
Domain ID domain_id2bs3B01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily30 — Beta-grasp domain
Domain ID domain_id2bs3B02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
Homologous superfamily homologous superfamily10 — Alpha-helical ferredoxin
Domain ID domain_id2bs3C00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
Domain ID domain_id2bs3D01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology50 — FAD/NAD(P)-binding domain
Homologous superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
Domain ID domain_id2bs3D02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology700 — Flavocytochrome C3; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Domain ID domain_id2bs3D03
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
Domain ID domain_id2bs3D04
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily820
Domain ID domain_id2bs3E01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily30 — Beta-grasp domain
Domain ID domain_id2bs3E02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
Homologous superfamily homologous superfamily10 — Alpha-helical ferredoxin
Domain ID domain_id2bs3F00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
Homologous superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit

7. Citations (6)