2bs4

GLU C180 -> ILE VARIANT QUINOL:FUMARATE REDUCTASE FROMWOLINELLA SUCCINOGENES

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A

物种未注明

UniProt P17412

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B × 2 (P17596) QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C × 2 (P17413) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 FE3-S4 CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 IRON/SULFUR CLUSTER × 2 DODECYL-BETA-D-MALTOSIDE × 2 2,3-DIMETHYL-1,4-NAPHTHOQUINONE × 2 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 FRDA_WOLSU
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–656; UniProt 1–656 作者链 D; PDB构建体 1–656; UniProt 1–656

QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B

物种未注明

UniProt P17596

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A × 2 (P17412) QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C × 2 (P17413) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 FE3-S4 CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 IRON/SULFUR CLUSTER × 2 DODECYL-BETA-D-MALTOSIDE × 2 2,3-DIMETHYL-1,4-NAPHTHOQUINONE × 2 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 FRDB_WOLSU
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–239; UniProt 1–239 作者链 E; PDB构建体 1–239; UniProt 1–239

QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C

物种未注明

UniProt P17413

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 6 QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A × 2 (P17412) QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B × 2 (P17596) FLAVIN-ADENINE DINUCLEOTIDE × 2 CITRIC ACID × 2 FE3-S4 CLUSTER × 2 PROTOPORPHYRIN IX CONTAINING FE × 4 SODIUM ION × 2 FE2/S2 (INORGANIC) CLUSTER × 2 IRON/SULFUR CLUSTER × 2 DODECYL-BETA-D-MALTOSIDE × 2 2,3-DIMETHYL-1,4-NAPHTHOQUINONE × 2 water × 6 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 FRDC_WOLSU
Isoform
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–256; UniProt 1–256 作者链 F; PDB构建体 1–256; UniProt 1–256

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id2bs4
沉积日期 deposition_date2005-05-14
结构标题 titleGLU C180 -> ILE VARIANT QUINOL:FUMARATE REDUCTASE FROMWOLINELLA SUCCINOGENES
关键词 keywords;2FE-2S, 3FE-4S, 4FE-4S, CITRIC ACID CYCLE, DIHAEM CYTOCHROME B, ELECTRON TRANSPORT, FAD, FLAVOPROTEIN, FUMARATE REDUCTASE, HEME, ION-SULPHUR PROTEIN, IRON, IRON-SULFUR, METAL-BINDING, OXIDOREDUCTASE, RESPIRATORY CHAIN, SUCCINATE DEHYDROGENASE, TRANSMEMBRANE, TRICARBOXYLIC ACID CYCLE ;; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2bs4__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2bs4__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2bs4__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)43.75 Å
Rg(电子密度)43.67 Å
总 Rg43.55 Å
原子数18578
残基数2300
排除体积332400 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2bs4__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (13)

6. 折叠分类 (SCOP + CATH) 26 domains

SCOP 2.08 (12 domains)

结构域编号 domain_idd2bs4a1
类 Class classa — All alpha proteins
折叠类型 Fold folda.7 — Spectrin repeat-like
超家族 Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
家族 Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
结构域编号 domain_idd2bs4a2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.3 — FAD/NAD(P)-binding domain
超家族 Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
家族 Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
结构域编号 domain_idd2bs4a3
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
超家族 Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
家族 Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
结构域编号 domain_idd2bs4b1
类 Class classa — All alpha proteins
折叠类型 Fold folda.1 — Globin-like
超家族 Superfamily superfamilya.1.2 — alpha-helical ferredoxin
家族 Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
结构域编号 domain_idd2bs4b2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
家族 Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
结构域编号 domain_idd2bs4c1
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.21 — Heme-binding four-helical bundle
超家族 Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
家族 Family familyf.21.2.1 — Fumarate reductase respiratory complex cytochrome b subunit, FrdC
结构域编号 domain_idd2bs4d1
类 Class classa — All alpha proteins
折叠类型 Fold folda.7 — Spectrin repeat-like
超家族 Superfamily superfamilya.7.3 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
家族 Family familya.7.3.1 — Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
结构域编号 domain_idd2bs4d2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.3 — FAD/NAD(P)-binding domain
超家族 Superfamily superfamilyc.3.1 — FAD/NAD(P)-binding domain
家族 Family familyc.3.1.4 — Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
结构域编号 domain_idd2bs4d3
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.168 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
超家族 Superfamily superfamilyd.168.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
家族 Family familyd.168.1.1 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
结构域编号 domain_idd2bs4e1
类 Class classa — All alpha proteins
折叠类型 Fold folda.1 — Globin-like
超家族 Superfamily superfamilya.1.2 — alpha-helical ferredoxin
家族 Family familya.1.2.1 — Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
结构域编号 domain_idd2bs4e2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
家族 Family familyd.15.4.2 — 2Fe-2S ferredoxin domains from multidomain proteins
结构域编号 domain_idd2bs4f_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.21 — Heme-binding four-helical bundle
超家族 Superfamily superfamilyf.21.2 — Fumarate reductase respiratory complex transmembrane subunits
家族 Family familyf.21.2.1 — Fumarate reductase respiratory complex cytochrome b subunit, FrdC

CATH v4.4 (14 domains)

结构域编号 domain_id2bs4A01
类 Class class3 — Alpha Beta
架构 Architecture architecture50 — 3-Layer(bba) Sandwich
拓扑 Topology topology50 — FAD/NAD(P)-binding domain
同源超家族 H-superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
结构域编号 domain_id2bs4A02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology700 — Flavocytochrome C3; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
结构域编号 domain_id2bs4A03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
同源超家族 H-superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
结构域编号 domain_id2bs4A04
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily820
结构域编号 domain_id2bs4B01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily30 — Beta-grasp domain
结构域编号 domain_id2bs4B02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
同源超家族 H-superfamily homologous superfamily10 — Alpha-helical ferredoxin
结构域编号 domain_id2bs4C00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
同源超家族 H-superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit
结构域编号 domain_id2bs4D01
类 Class class3 — Alpha Beta
架构 Architecture architecture50 — 3-Layer(bba) Sandwich
拓扑 Topology topology50 — FAD/NAD(P)-binding domain
同源超家族 H-superfamily homologous superfamily60 — FAD/NAD(P)-binding domain
结构域编号 domain_id2bs4D02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology700 — Flavocytochrome C3; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
结构域编号 domain_id2bs4D03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
同源超家族 H-superfamily homologous superfamily100 — Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
结构域编号 domain_id2bs4D04
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily820
结构域编号 domain_id2bs4E01
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology20 — Ubiquitin-like (UB roll)
同源超家族 H-superfamily homologous superfamily30 — Beta-grasp domain
结构域编号 domain_id2bs4E02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1060 — Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
同源超家族 H-superfamily homologous superfamily10 — Alpha-helical ferredoxin
结构域编号 domain_id2bs4F00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1300 — 3 helical TM bundles of succinate and fumarate reductases
同源超家族 H-superfamily homologous superfamily10 — Fumarate reductase/succinate dehydrogenase, transmembrane subunit

7. 引用文献 (6)