2btv

ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE

Method: X-RAY DIFFRACTION Dmax: 222.0 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 2btv

P(r) 距离分布 P(r) Distribution

P(r) distribution for 2btv
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id2btv
沉积日期 deposition_date1998-09-05
结构标题 titleATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE
关键词 keywordsVIRUS/VIRAL PROTEIN, Icosahedral virus, Virus; VIRUS
实验方法 methodX-RAY DIFFRACTION

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier65.49
回转半径 Rg (电子) rg_electron64.84
零角强度 I(0) i06815340000.00
分子量 molecular_weight699180.0 kDa
排除体积 excluded_volume875260 ų
包络体积 envelope_volume1236800 ų
水化壳体积 shell_volume153920 ų
包络直径 envelope_diameter225.8
壳层 Rg shell_rg69.25
包络 Rg envelope_rg64.15
形状 Rg shape_rg64.86
总 Rg total_rg64.86
总原子数 total_atoms49061
残基数 n_residues6267
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax222.0
Rg (实空间) rg_real65.29
Rg 误差 (实空间) rg_real_error2.25
I(0) (实空间) i0_real6.8150e+09
I(0) 误差 (实空间) i0_real_error1.3830e+08
Rg (倒空间) rg_reciprocal65.62
I(0) (倒空间) i0_reciprocal6819000000.0000
解质量估计 total_estimate0.8765
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary74.0
偏度 Skewness skewness0.221
峰度 Kurtosis kurtosis-0.468
角度范围 angular_range— – 0.1200 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha530200000.0000
实空间数据点数 n_real_points25
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.867; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.985; Smooth: 0.803

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合体信息 (2)

6. 折叠分类 (SCOP + CATH) 67 domains

SCOP 2.08 (28 domains)

结构域编号 domain_idd2btva_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.28 — Reovirus inner layer core protein p3
超家族 Superfamily superfamilye.28.1 — Reovirus inner layer core protein p3
家族 Family familye.28.1.1 — Orbivirus core
结构域编号 domain_idd2btvb_
类 Class classe — Multi-domain proteins (alpha and beta)
折叠类型 Fold folde.28 — Reovirus inner layer core protein p3
超家族 Superfamily superfamilye.28.1 — Reovirus inner layer core protein p3
家族 Family familye.28.1.1 — Orbivirus core
结构域编号 domain_idd2btvc1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvc2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvd1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvd2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btve1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btve2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvf1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvf2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvg1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvg2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvh1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvh2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvi1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvi2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvj1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvj2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvp1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvp2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvq1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvq2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvr1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvr2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvs1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvs2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein
结构域编号 domain_idd2btvt1
类 Class classa — All alpha proteins
折叠类型 Fold folda.115 — A virus capsid protein alpha-helical domain
超家族 Superfamily superfamilya.115.1 — A virus capsid protein alpha-helical domain
家族 Family familya.115.1.1 — Orbivirus capsid
结构域编号 domain_idd2btvt2
类 Class classb — All beta proteins
折叠类型 Fold foldb.19 — Viral protein domain
超家族 Superfamily superfamilyb.19.1 — Viral protein domain
家族 Family familyb.19.1.1 — Top domain of virus capsid protein

CATH v4.4 (39 domains)

结构域编号 domain_id2btvC01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvC02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvD02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvE01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvE02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvE03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvF01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvF02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvF03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvG01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvG02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvG03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvH01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvH02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvH03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvI01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvI02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvI03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvJ01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvJ02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvJ03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvP01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvP02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvP03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvQ01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvQ02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvQ03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvR01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvR02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvR03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvS01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvS02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvS03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3
结构域编号 domain_id2btvT01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology250 — Bluetongue Virus 10, subunit 1; domain 1
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 1
结构域编号 domain_id2btvT02
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id2btvT03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology170 — Bluetongue Virus 10, subunit 1; domain 3
同源超家族 H-superfamily homologous superfamily10 — Bluetongue Virus 10, subunit 1, domain 3

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