2bzb
NMR Solution Structure of a protein aspartic acid phosphate phosphatase from Bacillus Anthracis
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2bzb |
| 沉积日期 deposition_date | 2005-08-14 |
| 结构标题 title | NMR Solution Structure of a protein aspartic acid phosphate phosphatase from Bacillus Anthracis |
| 关键词 keywords | TRANSFERASE, PHOSPHATASE, PHOSPHORYLATION, SPORULATION, BACILLUS, ANTHRACIS, ANTITHETICAL, NEGATIVE, REGULATOR, SPINE; TRANSFERASE |
| 实验方法 method | SOLUTION NMR |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 18.71 Å |
| 回转半径 Rg (电子) rg_electron | 17.59 Å |
| 零角强度 I(0) i0 | 3216250000.00 |
| 分子量 molecular_weight | 479860.0 kDa |
| 排除体积 excluded_volume | 602420 ų |
| 包络体积 envelope_volume | 111000 ų |
| 水化壳体积 shell_volume | 33812 ų |
| 包络直径 envelope_diameter | 98.9 Å |
| 壳层 Rg shell_rg | 34.92 Å |
| 包络 Rg envelope_rg | 27.54 Å |
| 形状 Rg shape_rg | 17.68 Å |
| 总 Rg total_rg | 17.66 Å |
| 总原子数 total_atoms | 68736 |
| 残基数 n_residues | 3968 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 49.6 Å |
| Rg (实空间) rg_real | 17.47 Å |
| Rg 误差 (实空间) rg_real_error | 0.07 Å |
| I(0) (实空间) i0_real | 3.0510e+09 |
| I(0) 误差 (实空间) i0_real_error | 2.7030e+07 |
| Rg (倒空间) rg_reciprocal | 18.89 Å |
| I(0) (倒空间) i0_reciprocal | 3216000000.0000 |
| 解质量估计 total_estimate | 0.6807 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 19.0 Å |
| 偏度 Skewness skewness | 0.331 |
| 峰度 Kurtosis kurtosis | -0.397 |
| 角度范围 angular_range | — – 0.4250 Å−1 |
| 当前正则化参数 α current_alpha | 3.3540 |
| 最高正则化参数 α highest_alpha | 950600.0000 |
| 实空间数据点数 n_real_points | 74 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.005; Oscil: 0.966; Stabil: 0.984; Sysdev: 0.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (1)
6. 折叠分类 (SCOP + CATH) 6 domains
SCOP 2.08 (4 domains)
| 结构域编号 domain_id | d2bzba1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.30 — ROP-like |
| 超家族 Superfamily superfamily | a.30.7 — BAS1536-like |
| 家族 Family family | a.30.7.1 — BAS1536-like |
| 结构域编号 domain_id | d2bzba2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2bzbb2 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.30 — ROP-like |
| 超家族 Superfamily superfamily | a.30.7 — BAS1536-like |
| 家族 Family family | a.30.7.1 — BAS1536-like |
| 结构域编号 domain_id | d2bzbb3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (2 domains)
| 结构域编号 domain_id | 2bzbA00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 280 — MYOD Basic-Helix-Loop-Helix Domain, subunit B |
| 同源超家族 H-superfamily homologous superfamily | 10 — Helix-loop-helix DNA-binding domain |
| 结构域编号 domain_id | 2bzbB00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 280 — MYOD Basic-Helix-Loop-Helix Domain, subunit B |
| 同源超家族 H-superfamily homologous superfamily | 10 — Helix-loop-helix DNA-binding domain |