Aquifex aeolicus
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | Protein 2 | water × 2 | Consistent with protein count |
| UniProt name | DTD_AQUAE |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–148； UniProt 1–148 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2dbo |
| Deposition date deposition_date | 2005-12-15 |
| Structure title title | Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus |
| Keywords keywords | ;D-amino acid, D-Tyrosine, tRNA, deacylase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Hydrolase ;; HYDROLASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 19.64 Å |
| Rg (electron density) | 18.20 Å |
| Total Rg | 19.26 Å |
| Atom count | 2392 |
| Residues | 296 |
| Excluded volume | 43178 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d2dboa_ |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.110 — DTD-like |
| Superfamily Superfamily superfamily | c.110.1 — DTD-like |
| Family Family family | c.110.1.0 — automated matches |
| Domain ID domain_id | 2dboA00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 80 — D-tyrosyl-trna(Tyr) Deacylase; Chain: A; |
| Homologous superfamily homologous superfamily | 10 — D-tyrosyl-tRNA(Tyr) deacylase |