2dhh

Crystal structure of a multidrug transporter reveal a functionally rotating mechanism

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ACRB

Escherichia coli

UniProt P31224

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 3 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACRB_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1049; UniProt 1–1049 Author chain B; PDBConstruct 1–1049; UniProt 1–1049 Author chain C; PDBConstruct 1–1049; UniProt 1–1049

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2dhh
Deposition date deposition_date2006-03-23
Structure title titleCrystal structure of a multidrug transporter reveal a functionally rotating mechanism
Keywords keywordsmembrane transporter, membrane protein, multidrug efflux, drug resistance, transporter, exporter, antiporter; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2dhh__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2dhh__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2dhh__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)45.49 Å
Rg (electron density)44.92 Å
Total Rg45.24 Å
Atom count23322
Residues3066
Excluded volume421500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2dhh__assembly_1__model_1 trimeric (3) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

Domain ID domain_idd2dhha1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhha2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhha3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhha4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_idd2dhha5
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhha6
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhha7
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhha8
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_idd2dhhb1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhhb2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhb3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhb4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_idd2dhhb5
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhhb6
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhb7
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhb8
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_idd2dhhc1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhhc2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhc3
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhc4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_idd2dhhc5
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.35 — Multidrug efflux transporter AcrB transmembrane domain
Superfamily Superfamily superfamilyf.35.1 — Multidrug efflux transporter AcrB transmembrane domain
Family Family familyf.35.1.1 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_idd2dhhc6
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhc7
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.44 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family Family familyd.58.44.1 — Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Domain ID domain_idd2dhhc8
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.225 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily Superfamily superfamilyd.225.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family Family familyd.225.1.1 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

CATH v4.4 (24 domains)

Domain ID domain_id2dhhA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhA03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
Domain ID domain_id2dhhA04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_id2dhhA05
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhA06
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhA07
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhA08
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_id2dhhB01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhB03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
Domain ID domain_id2dhhB04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_id2dhhB05
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhB06
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhB07
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhB08
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_id2dhhC01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhC02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhC03
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1320 — Multidrug efflux transporter AcrB pore domain like
Domain ID domain_id2dhhC04
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Domain ID domain_id2dhhC05
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1640 — Multidrug efflux transporter AcrB transmembrane fold
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB transmembrane domain
Domain ID domain_id2dhhC06
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1430 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhC07
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1440 — Multidrug efflux transporter AcrB pore domain
Domain ID domain_id2dhhC08
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology2090 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Homologous superfamily homologous superfamily10 — Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
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7. Citations (1)