Pyrococcus horikoshii
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | Protein 2 | water × 2 | Consistent with protein count |
| UniProt name | VATE_PYRHO |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–198； UniProt 1–198 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2dma |
| Deposition date deposition_date | 2006-04-20 |
| Structure title title | Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II) |
| Keywords keywords | ;A-ATpase, Structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ;; HYDROLASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 24.51 Å |
| Rg (electron density) | 24.25 Å |
| Total Rg | 24.72 Å |
| Atom count | 1874 |
| Residues | 228 |
| Excluded volume | 33673 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d2dmaa_ |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.81 — FwdE/GAPDH domain-like |
| Superfamily Superfamily superfamily | d.81.4 — V-type ATPase subunit E-like |
| Family Family family | d.81.4.1 — V-type ATPase subunit E C-terminal domain |
| Domain ID domain_id | 2dmaA00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 2320 — hypothetical protein PF0899 fold |
| Homologous superfamily homologous superfamily | 30 — ATP synthase, E subunit, C-terminal |