2eho
Crystal structure of human GINS complex
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2eho |
| 沉积日期 deposition_date | 2007-03-07 |
| 结构标题 title | Crystal structure of human GINS complex |
| 关键词 keywords | protein-protein complex, 4-helical bundle, hydrophobic interaction, REPLICATION; REPLICATION |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 49.35 Å |
| 回转半径 Rg (电子) rg_electron | 49.54 Å |
| 零角强度 I(0) i0 | 918819000.00 |
| 分子量 molecular_weight | 243770.0 kDa |
| 排除体积 excluded_volume | 300400 ų |
| 包络体积 envelope_volume | 423170 ų |
| 水化壳体积 shell_volume | 72050 ų |
| 包络直径 envelope_diameter | 181.6 Å |
| 壳层 Rg shell_rg | 52.44 Å |
| 包络 Rg envelope_rg | 48.89 Å |
| 形状 Rg shape_rg | 49.56 Å |
| 总 Rg total_rg | 49.59 Å |
| 总原子数 total_atoms | 16802 |
| 残基数 n_residues | 1957 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 171.6 Å |
| Rg (实空间) rg_real | 49.66 Å |
| Rg 误差 (实空间) rg_real_error | 1.63 Å |
| I(0) (实空间) i0_real | 9.1880e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.8180e+07 |
| Rg (倒空间) rg_reciprocal | 49.35 Å |
| I(0) (倒空间) i0_reciprocal | 918400000.0000 |
| 解质量估计 total_estimate | 0.8549 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 48.2 Å |
| 偏度 Skewness skewness | 0.443 |
| 峰度 Kurtosis kurtosis | -0.411 |
| 角度范围 angular_range | — – 0.1600 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 83050000.0000 |
| 实空间数据点数 n_real_points | 33 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.792; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.945; Smooth: 0.788 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (6)
6. 折叠分类 (SCOP + CATH) 41 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d2ehoa1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.4 — SLD5 N-terminal domain-like |
| 结构域编号 domain_id | d2ehob1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.1 — PSF1 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoc1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.2 — PSF2 C-terminal domain-like |
| 结构域编号 domain_id | d2ehoc2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.2 — PSF2 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoc3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2ehod1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.3 — PSF3 C-terminal domain-like |
| 结构域编号 domain_id | d2ehod2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.4 — PSF3 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoe1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.4 — SLD5 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoe2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.0 — automated matches |
| 结构域编号 domain_id | d2ehof2 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.1 — PSF1 N-terminal domain-like |
| 结构域编号 domain_id | d2ehof3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2ehog1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.2 — PSF2 C-terminal domain-like |
| 结构域编号 domain_id | d2ehog2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.0 — automated matches |
| 结构域编号 domain_id | d2ehog3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2ehoh1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.3 — PSF3 C-terminal domain-like |
| 结构域编号 domain_id | d2ehoh2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.4 — PSF3 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoi1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.4 — SLD5 N-terminal domain-like |
| 结构域编号 domain_id | d2ehoi2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.0 — automated matches |
| 结构域编号 domain_id | d2ehoj_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.1 — PSF1 N-terminal domain-like |
| 结构域编号 domain_id | d2ehok1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.2 — PSF2 C-terminal domain-like |
| 结构域编号 domain_id | d2ehok2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.0 — automated matches |
| 结构域编号 domain_id | d2ehok3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2ehol1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.278 — GINS helical bundle-like |
| 超家族 Superfamily superfamily | a.278.1 — GINS helical bundle-like |
| 家族 Family family | a.278.1.3 — PSF3 C-terminal domain-like |
| 结构域编号 domain_id | d2ehol2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.344 — GINS/PriA/YqbF domain |
| 超家族 Superfamily superfamily | d.344.1 — PriA/YqbF domain |
| 家族 Family family | d.344.1.4 — PSF3 N-terminal domain-like |
CATH v4.4 (17 domains)
| 结构域编号 domain_id | 2ehoA00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoB01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 5 — Ribosomal Protein L9; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 50 — |
| 结构域编号 domain_id | 2ehoC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1020 — |
| 结构域编号 domain_id | 2ehoD00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 2050 — |
| 结构域编号 domain_id | 2ehoE01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoE02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 5 — Ribosomal Protein L9; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 2ehoF01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoG01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 5 — Ribosomal Protein L9; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 50 — |
| 结构域编号 domain_id | 2ehoG02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1020 — |
| 结构域编号 domain_id | 2ehoH00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 2050 — |
| 结构域编号 domain_id | 2ehoI01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoI02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 5 — Ribosomal Protein L9; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 2ehoJ01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1030 — |
| 结构域编号 domain_id | 2ehoK01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 5 — Ribosomal Protein L9; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 50 — |
| 结构域编号 domain_id | 2ehoK02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 1020 — |
| 结构域编号 domain_id | 2ehoL00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 2050 — |