2et2

Crystal structure of an Asn to Ala mutant of Winged Bean Chymotrypsin Inhibitor protein

Method: X-RAY DIFFRACTION Dmax: 51.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Chymotrypsin inhibitor 3

Psophocarpus tetragonolobus

UniProt P10822

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 25–207 Mutation:N17A NI NICKEL (II) ION × 1 SO4 SULFATE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;25.5% PEG 8K, 0.17 M Ammonium Sulphate, 15% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K Resolution 2.10 Å R-free 0.275
2 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 25–207 Mutation:N17A NI NICKEL (II) ION × 2 SO4 SULFATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;25.5% PEG 8K, 0.17 M Ammonium Sulphate, 15% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K Resolution 2.10 Å R-free 0.275

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 34 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ICW3_PSOTE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 4–186; UniProt 25–207

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2et2

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2et2
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id2et2
Deposition date deposition_date2005-10-27
Structure title titleCrystal structure of an Asn to Ala mutant of Winged Bean Chymotrypsin Inhibitor protein
Keywords keywordsBeta trefoil, mutation, scaffold, HYDROLASE INHIBITOR; HYDROLASE INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier16.99
Radius of gyration Rg (electron density) rg_electron15.38
Forward intensity I(0) i07300920.00
Molecular weight molecular_weight19503.0 kDa
Excluded volume excluded_volume24375 ų
Envelope volume envelope_volume28431 ų
Hydration-shell volume shell_volume15279 ų
Envelope diameter envelope_diameter50.6
Shell Rg shell_rg21.60
Envelope Rg envelope_rg15.79
Shape Rg shape_rg15.36
Total Rg total_rg16.58
Total atoms total_atoms1372
Residues n_residues175
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax51.9
Rg (real space) rg_real16.86
Rg uncertainty (real space) rg_real_error0.20
I(0) (real space) i0_real7.3010e+06
I(0) uncertainty (real space) i0_real_error8.3340e+04
Rg (reciprocal space) rg_reciprocal16.87
I(0) (reciprocal space) i0_reciprocal7301000.0000
Solution quality estimate total_estimate0.8945
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary23.2
Skewness Skewness skewness0.053
Kurtosis Kurtosis kurtosis-0.410
Angular range angular_range— – 0.4700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1611000.0000
Real-space data points n_real_points77
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.893; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.967

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2et2a_
Class classb — All beta proteins
Fold Fold foldb.42 — beta-Trefoil
Superfamily Superfamily superfamilyb.42.4 — STI-like
Family Family familyb.42.4.1 — Kunitz (STI) inhibitors

CATH v4.4 (1 domains)

Domain ID domain_id2et2A00
Class class2 — Mainly Beta
Architecture architecture80 — Trefoil
Topology topology10 — Trefoil (Acidic Fibroblast Growth Factor, subunit A)
Homologous superfamily homologous superfamily50

8. Citations (3)

9. Files and Curves (10)