2fg6
N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with sulfate and N-succinyl-L-norvaline
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2fg6 |
| 沉积日期 deposition_date | 2005-12-21 |
| 结构标题 title | N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with sulfate and N-succinyl-L-norvaline |
| 关键词 keywords | alpha/beta, TRANSFERASE; TRANSFERASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 39.12 Å |
| 回转半径 Rg (电子) rg_electron | 38.27 Å |
| 零角强度 I(0) i0 | 737291000.00 |
| 分子量 molecular_weight | 222800.0 kDa |
| 排除体积 excluded_volume | 278750 ų |
| 包络体积 envelope_volume | 343450 ų |
| 水化壳体积 shell_volume | 71540 ų |
| 包络直径 envelope_diameter | 118.2 Å |
| 壳层 Rg shell_rg | 47.11 Å |
| 包络 Rg envelope_rg | 37.13 Å |
| 形状 Rg shape_rg | 38.26 Å |
| 总 Rg total_rg | 38.74 Å |
| 总原子数 total_atoms | 15662 |
| 残基数 n_residues | 1929 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 113.4 Å |
| Rg (实空间) rg_real | 38.75 Å |
| Rg 误差 (实空间) rg_real_error | 0.45 Å |
| I(0) (实空间) i0_real | 7.3730e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.0380e+07 |
| Rg (倒空间) rg_reciprocal | 38.98 Å |
| I(0) (倒空间) i0_reciprocal | 737500000.0000 |
| 解质量估计 total_estimate | 0.8938 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 56.7 Å |
| 偏度 Skewness skewness | -0.036 |
| 峰度 Kurtosis kurtosis | -0.628 |
| 角度范围 angular_range | — – 0.2000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 368800000.0000 |
| 实空间数据点数 n_real_points | 41 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.956; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.776 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 30 domains
SCOP 2.08 (18 domains)
| 结构域编号 domain_id | d2fg6c1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6c2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6c3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fg6d1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6d2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6d3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fg6e1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6e2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6e3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fg6x1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6x2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6x3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fg6y1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6y2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6y3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fg6z1 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6z2 |
| 类 Class class | c — Alpha and beta proteins (a/b) |
| 折叠类型 Fold fold | c.78 — ATC-like |
| 超家族 Superfamily superfamily | c.78.1 — Aspartate/ornithine carbamoyltransferase |
| 家族 Family family | c.78.1.1 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | d2fg6z3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (12 domains)
| 结构域编号 domain_id | 2fg6C01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6C02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6D01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6D02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6E01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6E02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6X01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6X02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6Y01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6Y02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6Z01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |
| 结构域编号 domain_id | 2fg6Z02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 50 — Rossmann fold |
| 同源超家族 H-superfamily homologous superfamily | 1370 — Aspartate/ornithine carbamoyltransferase |