2fml
Crystal structure of MutT/nudix family protein from Enterococcus faecalis
1. Protein Identity and Related Structures Protein Identity & Related Structures
No usable UniProt protein identity is available for this entry.
The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.
Assembly Composition of the Current Entry
| Assembly | Physical composition | Protein state | 蛋白 / DNA / RNA / 其他Polymer | Data consistency |
|---|---|---|---|---|
| 1 | Protein homooligomer | Homooligomer | 2 / 0 / 0 / 0 | Consistent with protein count |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
2. Structure Basics 2. Structure Basics
| Entry ID entry_id | 2fml |
| Deposition date deposition_date | 2006-01-09 |
| Structure title title | Crystal structure of MutT/nudix family protein from Enterococcus faecalis |
| Keywords keywords | ;MutT/nudix family protein, Enterococcus faecalis, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ;; STRUCTURAL GENOMICS, UNKNOWN FUNCTION |
| Experimental Method method | X-RAY DIFFRACTION |
3. Official assembly/model SAXS Official SAXS Profiles
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
2fml__assembly_1__model_1
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
2fml__assembly_1__model_1 | I(q)
2fml__assembly_1__model_1 | P(r) · Pending
| Rg（Guinier） | 26.49 Å |
| Rg (electron density) | 25.34 Å |
| Total Rg | 26.08 Å |
| Atom count | 4190 |
| Residues | 509 |
| Excluded volume | 74283 ų |
| Maximum q | 0.500 Å⁻¹ |
4. Crystallography and Experiment 4. Crystallography & Experiment
5. Entities and Polymers Entities & Polymers (3)
6. Fold Classification (SCOP + CATH) 10 domains
SCOP 2.08 (4 domains)
| Domain ID domain_id | d2fmla1 |
| Class class | a — All alpha proteins |
| Fold Fold fold | a.4 — DNA/RNA-binding 3-helical bundle |
| Superfamily Superfamily superfamily | a.4.5 — 'Winged helix' DNA-binding domain |
| Family Family family | a.4.5.68 — Nudix-associated domain |
| Domain ID domain_id | d2fmla2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.113 — Nudix |
| Superfamily Superfamily superfamily | d.113.1 — Nudix |
| Family Family family | d.113.1.6 — BT0354 N-terminal domain-like |
| Domain ID domain_id | d2fmlb1 |
| Class class | a — All alpha proteins |
| Fold Fold fold | a.4 — DNA/RNA-binding 3-helical bundle |
| Superfamily Superfamily superfamily | a.4.5 — 'Winged helix' DNA-binding domain |
| Family Family family | a.4.5.68 — Nudix-associated domain |
| Domain ID domain_id | d2fmlb2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.113 — Nudix |
| Superfamily Superfamily superfamily | d.113.1 — Nudix |
| Family Family family | d.113.1.6 — BT0354 N-terminal domain-like |
CATH v4.4 (6 domains)
| Domain ID domain_id | 2fmlA01 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 287 — Helix Hairpins |
| Homologous superfamily homologous superfamily | 1030 — Nudix-associated domain |
| Domain ID domain_id | 2fmlA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 79 — Nucleoside Triphosphate Pyrophosphohydrolase |
| Homologous superfamily homologous superfamily | 10 — Nucleoside Triphosphate Pyrophosphohydrolase |
| Domain ID domain_id | 2fmlA03 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 10 — Arc Repressor Mutant, subunit A |
| Homologous superfamily homologous superfamily | 10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain |
| Domain ID domain_id | 2fmlB01 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 287 — Helix Hairpins |
| Homologous superfamily homologous superfamily | 1030 — Nudix-associated domain |
| Domain ID domain_id | 2fmlB02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 79 — Nucleoside Triphosphate Pyrophosphohydrolase |
| Homologous superfamily homologous superfamily | 10 — Nucleoside Triphosphate Pyrophosphohydrolase |
| Domain ID domain_id | 2fmlB03 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 10 — Arc Repressor Mutant, subunit A |
| Homologous superfamily homologous superfamily | 10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain |