2fsy
Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2fsy |
| 沉积日期 deposition_date | 2006-01-23 |
| 结构标题 title | Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV |
| 关键词 keywords | Bacteriophage, HK97, capsid protein, expansion intermediate, icosahedral VIRUS, VIRUS; VIRUS |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 54.59 Å |
| 回转半径 Rg (电子) rg_electron | 54.49 Å |
| 零角强度 I(0) i0 | 652680000.00 |
| 分子量 molecular_weight | 208120.0 kDa |
| 排除体积 excluded_volume | 258610 ų |
| 包络体积 envelope_volume | 394670 ų |
| 水化壳体积 shell_volume | 61937 ų |
| 包络直径 envelope_diameter | 200.6 Å |
| 壳层 Rg shell_rg | 54.39 Å |
| 包络 Rg envelope_rg | 54.37 Å |
| 形状 Rg shape_rg | 54.43 Å |
| 总 Rg total_rg | 54.66 Å |
| 总原子数 total_atoms | 14631 |
| 残基数 n_residues | 1899 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 191.6 Å |
| Rg (实空间) rg_real | 54.79 Å |
| Rg 误差 (实空间) rg_real_error | 2.78 Å |
| I(0) (实空间) i0_real | 6.5270e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.4590e+07 |
| Rg (倒空间) rg_reciprocal | 54.41 Å |
| I(0) (倒空间) i0_reciprocal | 652300000.0000 |
| 解质量估计 total_estimate | 0.6397 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 66.1 Å |
| 偏度 Skewness skewness | 0.368 |
| 峰度 Kurtosis kurtosis | -0.354 |
| 角度范围 angular_range | — – 0.1450 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 30300000.0000 |
| 实空间数据点数 n_real_points | 30 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.870; Stabil: 1.000; Sysdev: 0.001; Positv: 1.000; Valcen: 0.966; Smooth: 0.732 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (1)
6. 折叠分类 (SCOP + CATH) 19 domains
SCOP 2.08 (5 domains)
| 结构域编号 domain_id | d2fsya1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.183 — Major capsid protein gp5 |
| 超家族 Superfamily superfamily | d.183.1 — Major capsid protein gp5 |
| 家族 Family family | d.183.1.1 — Major capsid protein gp5 |
| 结构域编号 domain_id | d2fsyb1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.183 — Major capsid protein gp5 |
| 超家族 Superfamily superfamily | d.183.1 — Major capsid protein gp5 |
| 家族 Family family | d.183.1.1 — Major capsid protein gp5 |
| 结构域编号 domain_id | d2fsyc1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.183 — Major capsid protein gp5 |
| 超家族 Superfamily superfamily | d.183.1 — Major capsid protein gp5 |
| 家族 Family family | d.183.1.1 — Major capsid protein gp5 |
| 结构域编号 domain_id | d2fsyd1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.183 — Major capsid protein gp5 |
| 超家族 Superfamily superfamily | d.183.1 — Major capsid protein gp5 |
| 家族 Family family | d.183.1.1 — Major capsid protein gp5 |
| 结构域编号 domain_id | d2fsye1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.183 — Major capsid protein gp5 |
| 超家族 Superfamily superfamily | d.183.1 — Major capsid protein gp5 |
| 家族 Family family | d.183.1.1 — Major capsid protein gp5 |
CATH v4.4 (14 domains)
| 结构域编号 domain_id | 2fsyA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyB02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyC02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyD01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyD02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyE01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyE02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyF01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyF02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |
| 结构域编号 domain_id | 2fsyG01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2400 — Major capsid protein gp5 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Major capsid protein gp5 |
| 结构域编号 domain_id | 2fsyG02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 2320 — hypothetical protein PF0899 fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — hypothetical protein PF0899 domain |