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1if0

PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)

Method: ELECTRON MICROSCOPY Dmax: 154.4 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 1if0

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1if0
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id1if0
沉积日期 deposition_date2001-04-11
结构标题 titlePSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)
关键词 keywordsBacteriophage, Virus, Capsid, cryoEM, Pseudo-atomic model., Icosahedral virus; VIRUS
实验方法 methodELECTRON MICROSCOPY
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier46.75 Å
回转半径 Rg (电子) rg_electron46.45 Å
零角强度 I(0) i0598975000.00
分子量 molecular_weight197760.0 kDa
排除体积 excluded_volume241030 ų
包络体积 envelope_volume259030 ų
水化壳体积 shell_volume50627 ų
包络直径 envelope_diameter165.1 Å
壳层 Rg shell_rg46.82 Å
包络 Rg envelope_rg43.19 Å
形状 Rg shape_rg46.38 Å
总 Rg total_rg46.46 Å
总原子数 total_atoms—
残基数 n_residues—
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 Å−1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax154.4 Å
Rg (实空间) rg_real46.76 Å
Rg 误差 (实空间) rg_real_error1.28 Å
I(0) (实空间) i0_real5.9890e+08
I(0) 误差 (实空间) i0_real_error1.1700e+07
Rg (倒空间) rg_reciprocal46.75 Å
I(0) (倒空间) i0_reciprocal598900000.0000
解质量估计 total_estimate0.8875
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary59.0 Å
偏度 Skewness skewness0.310
峰度 Kurtosis kurtosis-0.318
角度范围 angular_range— – 0.1700 Å−1
当前正则化参数 α current_alpha0.0001
最高正则化参数 α highest_alpha39250000.0000
实空间数据点数 n_real_points35
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.918; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.782
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (1)

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6. 折叠分类 (SCOP + CATH) 7 domains

SCOP 2.08 (7 domains)

结构域编号 domain_idd1if0a_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0b_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0c_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0d_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0e_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0f_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
结构域编号 domain_idd1if0g_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.14 — Bacteriophage HK97 procapsid (prohead II)
超家族 Superfamily superfamilyi.14.1 — Bacteriophage HK97 procapsid (prohead II)
家族 Family familyi.14.1.1 — Bacteriophage HK97 procapsid (prohead II)
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7. 引用文献 (3)

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8. 文件与曲线 (10)