2g9t
Crystal structure of the SARS coronavirus nsp10 at 2.1A
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2g9t |
| 沉积日期 deposition_date | 2006-03-07 |
| 结构标题 title | Crystal structure of the SARS coronavirus nsp10 at 2.1A |
| 关键词 keywords | sars, nsp10, VIRAL PROTEIN; VIRAL PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 52.19 Å |
| 回转半径 Rg (电子) rg_electron | 52.15 Å |
| 零角强度 I(0) i0 | 1514230000.00 |
| 分子量 molecular_weight | 304790.0 kDa |
| 排除体积 excluded_volume | 372090 ų |
| 包络体积 envelope_volume | 545870 ų |
| 水化壳体积 shell_volume | 87093 ų |
| 包络直径 envelope_diameter | 171.7 Å |
| 壳层 Rg shell_rg | 55.40 Å |
| 包络 Rg envelope_rg | 50.85 Å |
| 形状 Rg shape_rg | 52.14 Å |
| 总 Rg total_rg | 52.27 Å |
| 总原子数 total_atoms | 20963 |
| 残基数 n_residues | 2828 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 170.9 Å |
| Rg (实空间) rg_real | 52.34 Å |
| Rg 误差 (实空间) rg_real_error | 1.53 Å |
| I(0) (实空间) i0_real | 1.5140e+09 |
| I(0) 误差 (实空间) i0_real_error | 2.9700e+07 |
| Rg (倒空间) rg_reciprocal | 52.05 Å |
| I(0) (倒空间) i0_reciprocal | 1514000000.0000 |
| 解质量估计 total_estimate | 0.5549 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 51.3 Å |
| 偏度 Skewness skewness | 0.404 |
| 峰度 Kurtosis kurtosis | -0.626 |
| 角度范围 angular_range | — – 0.1500 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 5955000000.0000 |
| 实空间数据点数 n_real_points | 31 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.675; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.999; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 24 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d2g9ta1 |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tb_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tc_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9td_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9te_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tf_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tg_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9th_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9ti_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tj_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tk_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tl_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tm_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tn_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9to_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tp_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tq_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tr_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9ts_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tt_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tu_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tv_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tw_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |
| 结构域编号 domain_id | d2g9tx_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.86 — Coronavirus NSP10-like |
| 超家族 Superfamily superfamily | g.86.1 — Coronavirus NSP10-like |
| 家族 Family family | g.86.1.1 — Coronavirus NSP10-like |