2ggp

Solution structure of the Atx1-Cu(I)-Ccc2a complex

Method: SOLUTION NMR Dmax: 60.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Metal homeostasis factor ATX1

Saccharomyces cerevisiae

UniProt P38636

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–73 Fragment:HMA domain, residues 1-73 Probable copper-transporting ATPase × 1 (P38995) CU1 COPPER (I) ION × 1 SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 100 mM KPi;Pressure ambient NMR sample composition:1mM Atx1 U-15N,13C, 1mM Ccc2a unlabeled, 1mM Cu(I), 100mM KPi, 90% H2O, 10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

7 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ATX1_YEAST
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–73; UniProt 1–73

Probable copper-transporting ATPase

Saccharomyces cerevisiae

UniProt P38995

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 2–72 Fragment:HMA 1 domain, residues 2-72 Metal homeostasis factor ATX1 × 1 (P38636) CU1 COPPER (I) ION × 1 SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 100 mM KPi;Pressure ambient NMR sample composition:1mM Atx1 U-15N,13C, 1mM Ccc2a unlabeled, 1mM Cu(I), 100mM KPi, 90% H2O, 10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ATU2_YEAST
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 2–72; UniProt 2–72

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2ggp

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2ggp
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2ggp
Deposition date deposition_date2006-03-24
Structure title titleSolution structure of the Atx1-Cu(I)-Ccc2a complex
Keywords keywordsCopper transport, complex, Structural Genomics, Structural Proteomics in Europe, SPINE, CHAPERONE, METAL TRANSPORT; CHAPERONE, METAL TRANSPORT
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier16.69
Radius of gyration Rg (electron density) rg_electron16.65
Forward intensity I(0) i01485170000.00
Molecular weight molecular_weight323260.0 kDa
Excluded volume excluded_volume403400 ų
Envelope volume envelope_volume38320 ų
Hydration-shell volume shell_volume17574 ų
Envelope diameter envelope_diameter64.3
Shell Rg shell_rg24.78
Envelope Rg envelope_rg19.21
Shape Rg shape_rg16.66
Total Rg total_rg16.73
Total atoms total_atoms45300
Residues n_residues2900
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax60.4
Rg (real space) rg_real16.74
Rg uncertainty (real space) rg_real_error0.50
I(0) (real space) i0_real1.4850e+09
I(0) uncertainty (real space) i0_real_error1.9290e+07
Rg (reciprocal space) rg_reciprocal16.74
I(0) (reciprocal space) i0_reciprocal1485000000.0000
Solution quality estimate total_estimate0.8082
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary17.2
Skewness Skewness skewness0.420
Kurtosis Kurtosis kurtosis-0.307
Angular range angular_range— – 0.4750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha899800.0000
Real-space data points n_real_points78
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.544; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.871; Smooth: 1.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd2ggpa_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.17 — HMA, heavy metal-associated domain
Family Family familyd.58.17.1 — HMA, heavy metal-associated domain
Domain ID domain_idd2ggpb2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.17 — HMA, heavy metal-associated domain
Family Family familyd.58.17.1 — HMA, heavy metal-associated domain
Domain ID domain_idd2ggpb3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (2 domains)

Domain ID domain_id2ggpA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily100
Domain ID domain_id2ggpB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily100

8. Citations (1)

9. Files and Curves (10)