Metal homeostasis factor ATX1
Saccharomyces cerevisiae
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain A; UniProt 1–73 | Fragment:HMA domain, residues 1-73 | Probable copper-transporting ATPase × 1 (P38995) CU1 COPPER (I) ION × 1 | SOLUTION NMR NMR measurement conditions:pH 7;298 K;Ionic strength (raw mmCIF value) 100 mM KPi;Pressure ambient NMR sample composition:1mM Atx1 U-15N,13C, 1mM Ccc2a unlabeled, 1mM Cu(I), 100mM KPi, 90% H2O, 10% D2O | 90% H2O/10% D2O | Resolution not provided |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 2GGP | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1CC7 CRYSTAL STRUCTURE OF THE ATX1 METALLOCHAPERONE PROTEIN Deposited 1999-03-04 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1–73(73 aa)
|
Not recorded | BEN BENZAMIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6;pH 6.0
|
Resolution 1.20 Å R-free 0.211 |
| 1CC8 CRYSTAL STRUCTURE OF THE ATX1 METALLOCHAPERONE PROTEIN Deposited 1999-03-04 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1–73(73 aa)
|
Not recorded | HG MERCURY (II) ION × 1 BEN BENZAMIDINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6;pH 6.0
|
Resolution 1.02 Å R-free 0.172 |
| 1FD8 SOLUTION STRUCTURE OF THE CU(I) FORM OF THE YEAST METALLOCHAPERONE, ATX1 Deposited 2000-07-20 | Different construct Different oligomeric state Different experimental conditions | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
SOLUTION NMR
NMR measurement conditions
pH 7;298 K;Ionic strength (raw mmCIF value) 100mM phosphate;Pressure ambient
NMR sample composition
1.8mM Cu(I)-Atx1 15N; 100mM phosphate buffer NA; 90% H2O, 10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 1FES SOLUTION STRUCTURE OF THE APO FORM OF THE YEAST METALLOCHAPERONE, ATX1 Deposited 2000-07-22 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1–73(73 aa)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 7;298 K;Ionic strength (raw mmCIF value) 100mM phosphate;Pressure ambient
NMR sample composition
1.8mM Apo-Atx1 15N; 100mM phosphate buffer NA; 90% H2O, 10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
Chain C
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 4 4SM TETRATHIOMOLYBDATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain D
1–73(73 aa)
Chain E
1–73(73 aa)
Chain F
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 4 4SM TETRATHIOMOLYBDATE × 1 MLT D-MALATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain G
1–73(73 aa)
Chain H
1–73(73 aa)
Chain I
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 4 4SM TETRATHIOMOLYBDATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain J
1–73(73 aa)
Chain K
1–73(73 aa)
Chain L
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 4 4SM TETRATHIOMOLYBDATE × 1 MLT D-MALATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 6 PDB declaration: hexameric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
Chain C
1–73(73 aa)
Chain D
1–73(73 aa)
Chain E
1–73(73 aa)
Chain F
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 8 4SM TETRATHIOMOLYBDATE × 2 MLT D-MALATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 3K7R Crystal structure of [TM][CuAtx1]3 Deposited 2009-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 6 PDB declaration: hexameric |
Chain G
1–73(73 aa)
Chain H
1–73(73 aa)
Chain I
1–73(73 aa)
Chain J
1–73(73 aa)
Chain K
1–73(73 aa)
Chain L
1–73(73 aa)
|
Not recorded | CU COPPER (II) ION × 8 4SM TETRATHIOMOLYBDATE × 2 MLT D-MALATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 7;287 K;0.15 M DL-Malic acid, pH 7.0, 20% PEG 3350, EVAPORATION, temperature 287K
|
Resolution 2.28 Å R-free 0.256 |
| 5VDE Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form I Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.3;293 K;0.1 M HEPES (pH 7.3), 24% (W/v) PEG3350
|
Resolution 1.65 Å R-free 0.206 |
| 5VDE Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form I Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain C
1–73(73 aa)
Chain D
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.3;293 K;0.1 M HEPES (pH 7.3), 24% (W/v) PEG3350
|
Resolution 1.65 Å R-free 0.206 |
| 5VDE Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form I Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
Chain C
1–73(73 aa)
Chain D
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.3;293 K;0.1 M HEPES (pH 7.3), 24% (W/v) PEG3350
|
Resolution 1.65 Å R-free 0.206 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain C
1–73(73 aa)
Chain D
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain E
1–73(73 aa)
Chain F
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain G
1–73(73 aa)
Chain H
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
1–73(73 aa)
Chain B
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain C
1–73(73 aa)
Chain D
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
| 5VDF Crystal Structure of Cu(I)-loaded yeast Atx1: Crystal Form II Deposited 2017-04-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 7 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain G
1–73(73 aa)
Chain H
1–73(73 aa)
|
Not recorded | CU1 COPPER (I) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;0.1 M HEPES (pH 7.9), 20% (w/v) PEG3350
|
Resolution 1.93 Å R-free 0.242 |
7 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | ATX1_YEAST |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 1–73; UniProt 1–73 |