2grv
Crystal Structure of LpqW
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2grv |
| 沉积日期 deposition_date | 2006-04-25 |
| 结构标题 title | Crystal Structure of LpqW |
| 关键词 keywords | substrate-binding protein scaffold, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 54.60 Å |
| 回转半径 Rg (电子) rg_electron | 55.07 Å |
| 零角强度 I(0) i0 | 384199000.00 |
| 分子量 molecular_weight | 162770.0 kDa |
| 排除体积 excluded_volume | 203750 ų |
| 包络体积 envelope_volume | 297720 ų |
| 水化壳体积 shell_volume | 48220 ų |
| 包络直径 envelope_diameter | 181.8 Å |
| 壳层 Rg shell_rg | 52.07 Å |
| 包络 Rg envelope_rg | 53.74 Å |
| 形状 Rg shape_rg | 55.07 Å |
| 总 Rg total_rg | 54.99 Å |
| 总原子数 total_atoms | 11479 |
| 残基数 n_residues | 1536 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 166.7 Å |
| Rg (实空间) rg_real | 55.03 Å |
| Rg 误差 (实空间) rg_real_error | 1.79 Å |
| I(0) (实空间) i0_real | 3.8420e+08 |
| I(0) 误差 (实空间) i0_real_error | 8.3930e+06 |
| Rg (倒空间) rg_reciprocal | 54.19 Å |
| I(0) (倒空间) i0_reciprocal | 383700000.0000 |
| 解质量估计 total_estimate | 0.4874 |
| 解质量评级 solution_quality | SUSPICIOUS a SUSPICIOUS solution |
| P(r) 峰数 n_peaks | 3 |
| 主峰位置 r_peak_primary | 34.5 Å |
| 偏度 Skewness skewness | 0.310 |
| 峰度 Kurtosis kurtosis | -0.974 |
| 角度范围 angular_range | — – 0.1450 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 15910000.0000 |
| 实空间数据点数 n_real_points | 30 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.582; Stabil: 1.000; Sysdev: 0.017; Positv: 1.000; Valcen: 0.531; Smooth: 0.003 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 9 domains
CATH v4.4 (9 domains)
| 结构域编号 domain_id | 2grvA01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 190 — D-Maltodextrin-Binding Protein; domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Periplasmic binding protein-like II |
| 结构域编号 domain_id | 2grvA02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 76 — Dipeptide-binding Protein; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 1 |
| 结构域编号 domain_id | 2grvA03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 105 — Dipeptide-binding Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 3 |
| 结构域编号 domain_id | 2grvB01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 190 — D-Maltodextrin-Binding Protein; domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Periplasmic binding protein-like II |
| 结构域编号 domain_id | 2grvB02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 76 — Dipeptide-binding Protein; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 1 |
| 结构域编号 domain_id | 2grvB03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 105 — Dipeptide-binding Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 3 |
| 结构域编号 domain_id | 2grvC01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| 拓扑 Topology topology | 190 — D-Maltodextrin-Binding Protein; domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Periplasmic binding protein-like II |
| 结构域编号 domain_id | 2grvC02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 76 — Dipeptide-binding Protein; domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 1 |
| 结构域编号 domain_id | 2grvC03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 105 — Dipeptide-binding Protein; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Dipeptide-binding Protein; Domain 3 |