|
1CVI
CRYSTAL STRUCTURE OF HUMAN PROSTATIC ACID PHOSPHATASE
Deposited 1999-08-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
33–374(342 aa)
Chain B
33–374(342 aa)
Chain C
33–374(342 aa)
Chain D
33–374(342 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
GLY GLYCINE × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;289 K;PEG 1450, POTASSIUM CHLORIDE, GLYCINE, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 3.20 Å
R-free 0.274
|
|
1CVI
CRYSTAL STRUCTURE OF HUMAN PROSTATIC ACID PHOSPHATASE
Deposited 1999-08-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
33–374(342 aa)
Chain B
33–374(342 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
GLY GLYCINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;289 K;PEG 1450, POTASSIUM CHLORIDE, GLYCINE, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 3.20 Å
R-free 0.274
|
|
1CVI
CRYSTAL STRUCTURE OF HUMAN PROSTATIC ACID PHOSPHATASE
Deposited 1999-08-23
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
33–374(342 aa)
Chain D
33–374(342 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
GLY GLYCINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;289 K;PEG 1450, POTASSIUM CHLORIDE, GLYCINE, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 3.20 Å
R-free 0.274
|
|
1ND5
Crystal Structures of Human Prostatic Acid Phosphatase in Complex with a Phosphate Ion and alpha-Benzylaminobenzylphosphonic Acid Update the Mechanistic Picture and Offer New Insights into Inhibitor Design
Deposited 2002-12-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
33–386(354 aa)
Chain B
33–386(354 aa)
Chain C
33–386(354 aa)
|
Not recorded
|
2BF ALPHA-BENZYL-AMINOBENZYL-PHOSPHONIC ACID × 3
1PE PENTAETHYLENE GLYCOL × 7
NDG 2-acetamido-2-deoxy-alpha-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;PEG, KCL, Glycine, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.90 Å
R-free 0.279
|
|
1ND5
Crystal Structures of Human Prostatic Acid Phosphatase in Complex with a Phosphate Ion and alpha-Benzylaminobenzylphosphonic Acid Update the Mechanistic Picture and Offer New Insights into Inhibitor Design
Deposited 2002-12-07
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
33–386(354 aa)
Chain D
33–386(354 aa)
|
Not recorded
|
2BF ALPHA-BENZYL-AMINOBENZYL-PHOSPHONIC ACID × 2
1PE PENTAETHYLENE GLYCOL × 3
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;PEG, KCL, Glycine, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.90 Å
R-free 0.279
|
|
1ND6
Crystal Structures of Human Prostatic Acid Phosphatase in Complex with a Phosphate Ion and alpha-Benzylaminobenzylphosphonic Acid Update the Mechanistic Picture and Offer New Insights into Inhibitor Design
Deposited 2002-12-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
33–386(354 aa)
Chain B
33–386(354 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 2
1PE PENTAETHYLENE GLYCOL × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
GLY GLYCINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;PEG, KCL, Glycine, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.256
|
|
1ND6
Crystal Structures of Human Prostatic Acid Phosphatase in Complex with a Phosphate Ion and alpha-Benzylaminobenzylphosphonic Acid Update the Mechanistic Picture and Offer New Insights into Inhibitor Design
Deposited 2002-12-07
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
33–386(354 aa)
Chain D
33–386(354 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 2
1PE PENTAETHYLENE GLYCOL × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;PEG, KCL, Glycine, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.256
|
|
1ND6
Crystal Structures of Human Prostatic Acid Phosphatase in Complex with a Phosphate Ion and alpha-Benzylaminobenzylphosphonic Acid Update the Mechanistic Picture and Offer New Insights into Inhibitor Design
Deposited 2002-12-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Other combination
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
33–386(354 aa)
Chain B
33–386(354 aa)
Chain C
33–386(354 aa)
Chain D
33–386(354 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 4
1PE PENTAETHYLENE GLYCOL × 4
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
GLY GLYCINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;PEG, KCL, Glycine, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.40 Å
R-free 0.256
|
|
2L3H
NMR Structure in a Membrane Environment Reveals Putative Amyloidogenic Regions of the SEVI Precursor Peptide PAP248-286
Deposited 2010-09-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
248–286(39 aa)
Fragment:UNP residues 248-286
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.3;310 K;Ionic strength (raw mmCIF value) 20;Pressure ambient
NMR sample composition
2.5 mM PAP248-286-1, 120 mM sodium chloride-2, 20 mM sodium phosphate-3, 200 mM [U-99% 2H] SDS-4, 10 % [U-99% 2H] D2O-5, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
2L77
Solution NMR structure of PAP248-286 in 50% TFE
Deposited 2010-12-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
248–286(39 aa)
Fragment:UNP residues 248-286
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.5;298 K;Pressure ambient
NMR sample composition
1.2 mM PAP248-286-1; 20 mM sodium phosphate-2; 10 % [U-99% 2H] D2O-3; 50 % [U-99% 2H] TFE-4; trifluoroethanol/water | trifluoroethanol/water
|
Resolution not provided
|
|
2L79
Solution NMR structure of PAP248-286 in 30% TFE
Deposited 2010-12-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
248–286(39 aa)
Fragment:UNP residues 248-286
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.5;298 K;Pressure ambient
NMR sample composition
1.2 mM PAP248-286-1; 20 mM sodium phosphate-2; 10 % [U-99% 2H] D2O-3; 30 % [U-99% 2H] TFE-4; trifluoroethanol/water | trifluoroethanol/water
|
Resolution not provided
|
|
2MG0
PAP262-270 in SDS micelles
Deposited 2013-10-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
262–270(9 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
298 K
NMR sample composition
300 uM protein_1-1, 50 mM [U-99% 2H] SDS-2, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
3PPD
GGVLVN segment from Human Prostatic Acid Phosphatase Residues 260-265, involved in Semen-Derived Enhancer of Viral Infection
Deposited 2010-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
260–265(6 aa)
Fragment:Residue 260-265
|
Not recorded
|
ZN ZINC ION × 6
ACY ACETIC ACID × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;298 K;0.1M MES pH6.0, 0.2M Zn(OAc)2, 10%(w/v)PEG-8000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.219
|
|
7ZZV
Prostatic acid phosphatase (PAP) fragment (85-120)
Deposited 2022-05-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
85–120(36 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 3;298 K;Ionic strength (raw mmCIF value) 0;Pressure 1
NMR sample composition
0.8 mM pap85_120, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
8XJ4
Structure of prostatic acid phosphatase in human semen
Deposited 2023-12-20
|
Different construct
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
31–377(347 aa)
Chain B
31–377(347 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4
MAN alpha-D-mannopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.19 Å
|
|
9NMU
TCR156 bound to HLA A*02:01-PAP
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
GOL GLYCEROL × 7
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;295 K;0.2 M Sodium malonate, 0.1 M bis Tris-propane pH 7.5, 17% PEG 3500
|
Resolution 2.10 Å
R-free 0.227
|
|
9NMV
TCR156 S32Halpha bound to HLA A*02:01-PAP
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
GOL GLYCEROL × 6
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;0.2 M Sodium malonate, 0.1 M bis Tris-propane pH 7.5, 20% PEG3500
|
Resolution 1.97 Å
R-free 0.217
|
|
9NMW
TCR156 S30Ealpha S32Qalpha bound to HLA A*02:01-PAP
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
GOL GLYCEROL × 11
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;0.2 M Na2SO4, bis tris propane pH 7.5, 20% PEG 3350
|
Resolution 2.11 Å
R-free 0.232
|
|
9NMX
TCR156 S32Malpha variant bound to HLA A*02:01-PAP
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
MLI MALONATE ION × 2
GOL GLYCEROL × 12
NA SODIUM ION × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;0.2 M Sodium malonate, 0.1 M bis Tris-propane pH 7.5, 17% PEG 3500
|
Resolution 2.19 Å
R-free 0.229
|
|
9NMY
TCR156 S32Qalpha bound to HLA A*02:01-PAP
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
GOL GLYCEROL × 9
MLI MALONATE ION × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.3;295 K;0.2 M sodium malonat, 20% PEG 3350
|
Resolution 2.01 Å
R-free 0.227
|
|
9YTD
Designed antibody vAB66 targeting PAP-HLA A*02:01
Deposited 2025-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain C
112–120(9 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|