2iny

Nanoporous Crystals of Chicken Embryo Lethal Orphan (CELO) Adenovirus Major Coat Protein, Hexon

Method: X-RAY DIFFRACTION D_max: 133.9 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	2iny
沉积日期 deposition_date	2006-10-09
结构标题 title	Nanoporous Crystals of Chicken Embryo Lethal Orphan (CELO) Adenovirus Major Coat Protein, Hexon
关键词 keywords	AVIAN ADENOVIRUS, CELO, MAJOR COAT PROTEIN, HEXON, CRYSTAL PACKING, NANOTECHNOLOGY, VIRAL JELLY ROLL, viral protein; VIRAL PROTEIN
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	38.10 Å
回转半径 Rg (电子) rg_electron	37.94 Å
零角强度 I(0) i0	181783000.00
分子量 molecular_weight	106560.0 kDa
排除体积 excluded_volume	132310 Å³
包络体积 envelope_volume	202700 Å³
水化壳体积 shell_volume	45557 Å³
包络直径 envelope_diameter	141.0 Å
壳层 Rg shell_rg	42.01 Å
包络 Rg envelope_rg	39.81 Å
形状 Rg shape_rg	37.90 Å
总 Rg total_rg	38.36 Å
总原子数 total_atoms	7523
残基数 n_residues	941
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	133.9 Å
Rg (实空间) rg_real	38.36 Å
Rg 误差 (实空间) rg_real_error	1.37 Å
I(0) (实空间) i0_real	1.8180e+08
I(0) 误差 (实空间) i0_real_error	3.2660e+06
Rg (倒空间) rg_reciprocal	38.20 Å
I(0) (倒空间) i0_reciprocal	181800000.0000
解质量估计 total_estimate	0.8593
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	39.2 Å
偏度 Skewness skewness	0.483
峰度 Kurtosis kurtosis	-0.206
角度范围 angular_range	— – 0.2050 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	18700000.0000
实空间数据点数 n_real_points	42
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.804; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.907; Smooth: 0.846

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (1)

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7. 引用文献 (9)

Nanoporous crystals of chicken embryo lethal orphan (CELO) adenovirus major coat protein, hexon.

J.Struct.Biol. (2007)

PMID: 17071105 · DOI: 10.1016/j.jsb.2006.08.017 PRIMARY

Capsid-Like Arrays in Crystals of Chimpanzee Adenovirus Hexon

J.Struct.Biol. (2006)

;Structural and Phylogenetic Analysis of Adenovirus Hexons by Use of High-Resolution X-Ray Crystallographic, Molecular Modeling, and Sequence-Based Methods ;

J.Virol. (2003)

Type-Specific Epitope Locations Revealed by X-Ray Crystallographic Study of Adenovirus Type 5 Hexon

Mol.Ther. (2000)

Mutational Analysis of the Avian Adenovirus CELO, which Provides a Basis for Gene Delivery Vectors

J.Virol. (1999)

The Complete DNA Sequence and Genomic Organization of the Avian Adenovirus CELO

J.Virol. (1996)

;Analysis of 15 Adenovirus Hexon Proteins Reveals the Location and Structure of Seven Hypervariable Regions Containing Serotype-Specific Residues ;

J.Virol. (1996)

;Chicken Adenovirus (CELO Virus) Particles Augment Receptor-Mediated DNA Delivery to Mammalian Cells and Yield Exceptional Levels of Stable Transformants ;

J.Virol. (1993)

Purification and Properties of Chick Embryo Lethal Orphan Virus (an Avian Adenovirus)

Virology (1971)

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晶胞边长 a length_a	157.770 Å
晶胞边长 b length_b	157.770 Å
晶胞边长 c length_c	114.200 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	120.00 °
晶胞分子数 Z z_pdb	6

空间群 space_group	P 3 2 1
空间群编号 int_tables_number	150
晶系 crystal_system	—

分辨率 resolution	3.900 Å
最低分辨率 resolution_low	47.060 Å
R 因子 r_factor	—
R_work r_work	0.3720
R_free r_free	0.4160

描述 description	Hexon protein
分子量 formula_weight	106795.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体类型 type	polypeptide(L)
链编号 strand_id	A
原子数 atom_count	7523

Nanoporous Crystals of Chicken Embryo Lethal Orphan (CELO) Adenovirus Major Coat Protein, Hexon

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (1)

Entity 1 polymer

聚合体 Polymer

7. 引用文献 (9)

8. 文件与曲线 (10)

Files (7)

Curves (3)

fit	/app/data/saxs_computation/in/2iny/2iny.fit
pddf	/app/data/pr_computation/in/2iny/2iny.pr.out
profile	/app/data/saxs_computation/in/2iny/2iny.dat