2isz

Crystal structure of a two-domain IdeR-DNA complex crystal form I

Method: X-RAY DIFFRACTION
▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Iron-dependent repressor ideR

Mycobacterium tuberculosis

UniProt P0A672

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–DNA 同源多聚体 蛋白 4 DNA 2 mbtA/mbtB operator strand 1 × 1 mbtA/mbtB operator strand 2 × 1 NICKEL (II) ION × 12 SODIUM ION × 3 water × 6 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 IDER_MYCTU
Isoform —
PDB实体 3
链与序列区间 作者链 A; PDB构建体 1–140; UniProt 1–140 作者链 B; PDB构建体 1–140; UniProt 1–140 作者链 C; PDB构建体 1–140; UniProt 1–140 作者链 D; PDB构建体 1–140; UniProt 1–140

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id2isz
沉积日期 deposition_date2006-10-18
结构标题 titleCrystal structure of a two-domain IdeR-DNA complex crystal form I
关键词 keywordsDNA-binding protein, TRANSCRIPTION-DNA COMPLEX; TRANSCRIPTION/DNA
实验方法 methodX-RAY DIFFRACTION
▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2isz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2isz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2isz__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)32.35 Å
Rg(电子密度)32.19 Å
总 Rg32.52 Å
原子数5802
残基数626
排除体积98985 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2isz__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (6)

▼

6. 折叠分类 (SCOP + CATH) 16 domains

SCOP 2.08 (8 domains)

结构域编号 domain_idd2isza1
类 Class classa — All alpha proteins
折叠类型 Fold folda.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamilya.4.5 — 'Winged helix' DNA-binding domain
家族 Family familya.4.5.24 — Iron-dependent repressor protein
结构域编号 domain_idd2isza2
类 Class classa — All alpha proteins
折叠类型 Fold folda.76 — Iron-dependent repressor protein, dimerization domain
超家族 Superfamily superfamilya.76.1 — Iron-dependent repressor protein, dimerization domain
家族 Family familya.76.1.1 — Iron-dependent repressor protein, dimerization domain
结构域编号 domain_idd2iszb1
类 Class classa — All alpha proteins
折叠类型 Fold folda.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamilya.4.5 — 'Winged helix' DNA-binding domain
家族 Family familya.4.5.24 — Iron-dependent repressor protein
结构域编号 domain_idd2iszb2
类 Class classa — All alpha proteins
折叠类型 Fold folda.76 — Iron-dependent repressor protein, dimerization domain
超家族 Superfamily superfamilya.76.1 — Iron-dependent repressor protein, dimerization domain
家族 Family familya.76.1.1 — Iron-dependent repressor protein, dimerization domain
结构域编号 domain_idd2iszc1
类 Class classa — All alpha proteins
折叠类型 Fold folda.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamilya.4.5 — 'Winged helix' DNA-binding domain
家族 Family familya.4.5.24 — Iron-dependent repressor protein
结构域编号 domain_idd2iszc2
类 Class classa — All alpha proteins
折叠类型 Fold folda.76 — Iron-dependent repressor protein, dimerization domain
超家族 Superfamily superfamilya.76.1 — Iron-dependent repressor protein, dimerization domain
家族 Family familya.76.1.1 — Iron-dependent repressor protein, dimerization domain
结构域编号 domain_idd2iszd1
类 Class classa — All alpha proteins
折叠类型 Fold folda.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamilya.4.5 — 'Winged helix' DNA-binding domain
家族 Family familya.4.5.24 — Iron-dependent repressor protein
结构域编号 domain_idd2iszd2
类 Class classa — All alpha proteins
折叠类型 Fold folda.76 — Iron-dependent repressor protein, dimerization domain
超家族 Superfamily superfamilya.76.1 — Iron-dependent repressor protein, dimerization domain
家族 Family familya.76.1.1 — Iron-dependent repressor protein, dimerization domain

CATH v4.4 (8 domains)

结构域编号 domain_id2iszA01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
结构域编号 domain_id2iszA02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology60 — Diphtheria Toxin Repressor; domain 2
同源超家族 H-superfamily homologous superfamily10 — Iron dependent repressor, metal binding and dimerisation domain
结构域编号 domain_id2iszB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
结构域编号 domain_id2iszB02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology60 — Diphtheria Toxin Repressor; domain 2
同源超家族 H-superfamily homologous superfamily10 — Iron dependent repressor, metal binding and dimerisation domain
结构域编号 domain_id2iszC01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
结构域编号 domain_id2iszC02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology60 — Diphtheria Toxin Repressor; domain 2
同源超家族 H-superfamily homologous superfamily10 — Iron dependent repressor, metal binding and dimerisation domain
结构域编号 domain_id2iszD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology10 — Arc Repressor Mutant, subunit A
同源超家族 H-superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
结构域编号 domain_id2iszD02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology60 — Diphtheria Toxin Repressor; domain 2
同源超家族 H-superfamily homologous superfamily10 — Iron dependent repressor, metal binding and dimerisation domain
▶

7. 引用文献 (1)